Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq16867 84.2 1e-11 >seq16867 Length=4829 Score = 84.2 bits (92), Expect = 1e-11 Identities = 169/249 (68%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 ||| ||||||| ||||||||||| | |||| | ||| ||| ||||| | | ||| Sbjct 313 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 372 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATA--CCGATTCCACCAGCCCATTTTGAA 26227 || |||| | | ||| ||| ||| | | || ||||| |||||| |||||||| Sbjct 373 AGAACCTGAAGCACGAATTGAATGA--ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAA 430 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 ||| |||||| || ||| || |||||||||| || ||| || |||| Sbjct 431 ATATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAA 490 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 | |||||||||||||| | ||| | | | |||| || | || ||||| || || | Sbjct 491 AGCAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAG 550 Query 26348 GCATGAGTA 26356 || |||||| Sbjct 551 GCGTGAGTA 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252943346706575