Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq9384 93.3 5e-14
seq10602 89.7 6e-13
seq11349 84.2 3e-11
seq760 84.2 3e-11
seq3995 82.4 9e-11
>seq9384
Length=8221
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353
|||| ||||| || | |||||||| || ||||| || ||| ||||||||| |||||||
Sbjct 6050 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTAGAGGTTGCTTTATCTCTTC 5991
Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402
||||||||||||||||||||| || | ||| | || ||| ||| ||
Sbjct 5990 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 5942
>seq10602
Length=7473
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353
|||| ||||| || | |||||||| || ||||| || || ||||||||| |||||||
Sbjct 548 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 489
Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402
||||||||||||||||||||| || | ||| | || ||| ||| ||
Sbjct 488 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 440
>seq11349
Length=7084
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353
|||| ||||| || | |||||||| || ||||| || || ||||||||| |||||||
Sbjct 2281 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 2340
Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402
||||||||| ||||||||||| || | ||| | || ||| ||| ||
Sbjct 2341 GAATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 2389
>seq760
Length=26019
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353
|||| ||||| || | |||||||| || ||||| || || ||||||||| |||||||
Sbjct 13788 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 13847
Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402
||||||||| ||||||||||| || | ||| | || ||| ||| ||
Sbjct 13848 GAATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 13896
>seq3995
Length=13897
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 139295 AGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCT 139354
||| ||||| || | |||||||| || ||||| || || ||||||||| |||||||
Sbjct 8415 AGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTCG 8474
Query 139355 AATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402
||||||||| ||||||||||| || | ||| | || ||| ||| ||
Sbjct 8475 AATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 8522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578771570139320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |