Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq9384 93.3 5e-14 seq10602 89.7 6e-13 seq11349 84.2 3e-11 seq760 84.2 3e-11 seq3995 82.4 9e-11 >seq9384 Length=8221 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || ||| ||||||||| ||||||| Sbjct 6050 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTAGAGGTTGCTTTATCTCTTC 5991 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 5990 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 5942 >seq10602 Length=7473 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 548 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 489 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 488 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 440 >seq11349 Length=7084 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 2281 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 2340 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 2341 GAATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 2389 >seq760 Length=26019 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 13788 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 13847 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 13848 GAATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 13896 >seq3995 Length=13897 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 139295 AGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCT 139354 ||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 8415 AGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTCG 8474 Query 139355 AATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 8475 AATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 8522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578771570139320