Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq15692 95.1 2e-14 seq5175 95.1 2e-14 seq24931 89.7 7e-13 >seq15692 Length=5223 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| |||||||||||||||||||| || | ||||| | || | |||||| ||| Sbjct 784 TTTCCTGTAGCAATAACAAAATCATCAGGCTCATTATGTTGTAATATCATCCACATTGCC 725 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 || ||||| || | ||||||||||| ||||| | |||| | ||| |||| Sbjct 724 TCAACATATTCCCGAGCATGTCCCCAATCACGGCGAGCATTTATATTACCTA 673 >seq5175 Length=12175 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| |||||||||||||||||||| || | ||||| | || | |||||| ||| Sbjct 1913 TTTCCTGTAGCAATAACAAAATCATCAGGCTCATTATGTTGTAATATCATCCACATTGCC 1854 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 || ||||| || | ||||||||||| ||||| | |||| | ||| |||| Sbjct 1853 TCAACATATTCCCGAGCATGTCCCCAATCACGGCGAGCATTTATATTACCTA 1802 >seq24931 Length=2929 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| || |||||||||||||||||||| | ||||| | || | |||||| ||| Sbjct 2127 TTTCCTGTAGCGATAACAAAATCATCAGGTTCATTATGTTGTAATATCATCCACATTGCC 2068 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 || ||||| || | ||||| ||||| ||||| | |||| | ||| |||| Sbjct 2067 TCAACATATTCCCGAGCATGCCCCCAATCACGGCGAGCATTTATATTACCTA 2016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665233684250120