Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1624 109 7e-19 seq490 102 1e-16 seq20812 87.8 2e-12 seq2550 87.8 2e-12 seq9293 86.0 7e-12 >seq1624 Length=20192 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 14284 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 14225 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | Sbjct 14224 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCTCCT 14165 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || || |||||||||||||||| || || || Sbjct 14164 GAAGAAGTTTCTGTTTGCAATTTGGCTTCGATTGC 14130 >seq490 Length=29575 Score = 102 bits (112), Expect = 1e-16 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 3349 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 3290 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | | Sbjct 3289 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 3233 Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| | ||||||| |||||||| || || || Sbjct 3232 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 3195 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| || |||||| | || || ||||||||||| | || |||||||| Sbjct 4890 GAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 4831 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | | Sbjct 4830 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 4774 Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| | ||||||| |||||||| || || || Sbjct 4773 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 4736 >seq20812 Length=3765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| || |||||| | | || ||||||||||| | || |||||||| Sbjct 3577 GAAACTGGAATTCCCTATATGGTCTTTAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 3518 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | | Sbjct 3517 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 3461 Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| | ||||||| |||||||| || || || Sbjct 3460 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 3423 >seq2550 Length=17099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 || || |||||| | ||| ||||| || || || || | |||||| ||| | || Sbjct 11591 GGTGCTCTTCTCACTGGTCCACCAGGAACTGGCAAAACTTTACTCGCCAAAGCAACGGCA 11532 Query 175354 GGTGAATCAAATGTCCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || || | ||||| || |||||| | || | ||| | || | || | ||||||||||| Sbjct 11531 GGAGAGGCTAATGTACCTTTCATC-ACTGTTTCTGGCTCAGAATTCCTTGAGATGTTTGT 11473 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATG 175472 |||||| || || | | || | ||| | |||||||| || || | || ||| || Sbjct 11472 TGGTGTTGGCCCCGGACGTGTGAGGGATATGTTTGAAATGGCACGGAAGAAGTCACCTTG 11413 Query 175473 TATTGTCTTCATTGATGAGATTGATGC 175499 ||| | || ||||||||||||||||| Sbjct 11412 CATTCTTTTTATTGATGAGATTGATGC 11386 >seq9293 Length=8283 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACC---AA 75961 || ||||||| || |||||| | || || ||||||||||| | || || | || Sbjct 8167 GAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAAACCTAAA 8108 Query 75962 AAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGAT 76021 || | |||||||||||| || ||||||||||||| || |||||| | || || || Sbjct 8107 AAAAGTTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCG 8048 Query 76022 AAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| |||||||||||||||| ||||| || Sbjct 8047 CCTGAAGAGGTTTCTGTTTGCAATTTGGCTTCAATTGC 8010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596335886402080