Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq15966 105 1e-17 seq9420 105 1e-17 seq1871 105 1e-17 seq22378 98.7 2e-15 seq3965 98.7 2e-15 seq695 98.7 2e-15 seq5365 95.1 2e-14 seq567 95.1 2e-14 seq5142 93.3 8e-14 seq2634 93.3 8e-14 >seq15966 Length=5121 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 927 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 868 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 867 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 808 Query 193358 CATTTT 193363 ||| || Sbjct 807 CATATT 802 >seq9420 Length=8200 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 7158 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 7217 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 7218 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 7277 Query 193358 CATTTT 193363 ||| || Sbjct 7278 CATATT 7283 >seq1871 Length=19151 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 11590 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 11531 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 11530 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 11471 Query 193358 CATTTT 193363 ||| || Sbjct 11470 CATATT 11465 >seq22378 Length=3416 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || || || || || ||||| ||||| ||||||| ||| | ||| ||| || Sbjct 1544 CTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATCGT 1603 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||||||| ||||||||||| || ||||| | ||| || || || ||||| Sbjct 1604 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 1663 Query 193358 CATT 193361 |||| Sbjct 1664 CATT 1667 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| |||||||| || || || ||||| || || ||||| | ||| | || |||||| Sbjct 1811 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACGTTCTCAATAGT 1870 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || ||||| ||||| ||||||||||| || | ||||| ||||| ||||| Sbjct 1871 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1930 Query 193358 CATT 193361 |||| Sbjct 1931 CATT 1934 >seq3965 Length=13966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || || || || || ||||| ||||| ||||||| ||| | ||| ||| || Sbjct 1283 CTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATCGT 1342 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||||||| ||||||||||| || ||||| | ||| || || || ||||| Sbjct 1343 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 1402 Query 193358 CATT 193361 |||| Sbjct 1403 CATT 1406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| |||||||| || || || ||||| || || ||||| | ||| | ||| |||||| Sbjct 1551 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 1610 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || ||||| ||||| ||||||||||| || | ||||| ||||| ||||| Sbjct 1611 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1670 Query 193358 CATT 193361 |||| Sbjct 1671 CATT 1674 >seq695 Length=26773 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | | Sbjct 12190 AAAACCAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACA 12131 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| || ||||| |||| ||| ||||| ||||| || ||||| || || || || ||| Sbjct 12130 TTTTCGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTT 12071 Query 193347 ACAAATATTTGCATTTT 193363 || || || ||||| || Sbjct 12070 ACGAAGATCTGCATATT 12054 >seq5365 Length=11941 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| || | ||| ||||| || || || || || || ||||| ||||||| || | | Sbjct 416 AAAACCAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACA 357 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| ||| || || || | ||||||||| ||||||||||| || || || || ||||| Sbjct 356 TTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTG 297 Query 193347 ACAAATATTTGCATT 193361 ||||| || |||||| Sbjct 296 ACAAAGATCTGCATT 282 >seq567 Length=28520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| || | ||| ||||| || || || || || || ||||| ||||||| || | | Sbjct 7462 AAAACCAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACA 7403 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| ||| || || || | ||||||||| ||||||||||| || || || || ||||| Sbjct 7402 TTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTG 7343 Query 193347 ACAAATATTTGCATT 193361 ||||| || |||||| Sbjct 7342 ACAAAGATCTGCATT 7328 >seq5142 Length=12213 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | |||| Sbjct 7442 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 7501 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| ||| ||||| ||||| || ||||| || || || || || || || Sbjct 7502 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 7561 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 7562 ATCTGCATATT 7572 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 7161 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 7220 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 7221 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 7280 Query 193343 TTTTACAAATATTTGCAT 193360 || ||||| || ||||| Sbjct 7281 CTTAACAAAAATCTGCAT 7298 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| || ||||||||||| ||||||||||| || || || |||| || | ||| | Sbjct 6903 AATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCA 6962 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| || ||||||||||| || || || || || || || || ||||| Sbjct 6963 ATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 7022 Query 193353 ATTTGCAT 193360 | ||||| Sbjct 7023 GTCTGCAT 7030 >seq2634 Length=16880 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | |||| Sbjct 1902 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 1961 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| ||| ||||| ||||| || ||||| || || || || || || || Sbjct 1962 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 2021 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 2022 ATCTGCATATT 2032 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 1621 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 1680 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 1681 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 1740 Query 193343 TTTTACAAATATTTGCAT 193360 || ||||| || ||||| Sbjct 1741 CTTAACAAAAATCTGCAT 1758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899301949143120