Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2786 100 4e-16 seq27688 91.5 2e-13 seq27347 91.5 2e-13 seq3049 91.5 2e-13 seq13787 86.0 9e-12 >seq2786 Length=16508 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||||| || |||||||| ||||| || Sbjct 4171 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4230 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | |||||| Sbjct 4231 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4290 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 4291 GAATATACCCTCAAC 4305 >seq27688 Length=2484 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||| | || |||||||| ||||| || Sbjct 377 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 318 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 317 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 258 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 257 GAATATACCCTCAAC 243 >seq27347 Length=2531 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||| | || |||||||| ||||| || Sbjct 202 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 143 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 142 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 83 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 82 GAATATACCCTCAAC 68 >seq3049 Length=15854 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||| | || |||||||| ||||| || Sbjct 13777 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 13836 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 13837 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 13896 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 13897 GAATATACCCTCAAC 13911 >seq13787 Length=5932 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 || ||| |||||||| || | |||||||||| || |||||||| ||||| || Sbjct 754 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 813 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 814 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 873 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 874 GAATATACCCTCAAC 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731585279995600