Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2786 109 1e-18 seq3049 104 5e-17 seq27688 102 2e-16 seq23001 102 2e-16 seq8275 102 2e-16 seq18228 98.7 2e-15 seq3965 98.7 2e-15 seq13787 96.9 7e-15 seq22378 93.3 8e-14 seq12969 93.3 8e-14 seq27347 91.5 3e-13 >seq2786 Length=16508 Score = 109 bits (120), Expect = 1e-18 Identities = 177/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 4171 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4230 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | |||||| Sbjct 4231 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4290 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 4291 GAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 4348 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATA 50057 ||| | ||||| | ||||||||| |||||||| |||||| || | | |||| Sbjct 4349 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATA 4408 Query 50058 GCTTTAAATAA 50068 || |||||||| Sbjct 4409 GCATTAAATAA 4419 >seq3049 Length=15854 Score = 104 bits (114), Expect = 5e-17 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 13777 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 13836 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 13837 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 13896 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 13897 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTTTA 13954 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAA 50042 ||| | ||||| | ||||||||| |||||||| |||||| || Sbjct 13955 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 13999 >seq27688 Length=2484 Score = 102 bits (112), Expect = 2e-16 Identities = 161/226 (71%), Gaps = 5/226 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 377 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 318 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 317 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 258 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 257 GAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 200 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttt-tttGATAGAA 50042 ||| | ||||| | ||||||||| |||||||| ||||||| || Sbjct 199 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAA 154 >seq23001 Length=3288 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 2798 GTTCAATAATTCCACCACGAAGACGGAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 2857 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 2858 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 2906 >seq8275 Length=9039 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 4492 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 4433 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 4432 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 4384 >seq18228 Length=4442 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 3612 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 3553 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| |||||||||||||| |||||||| Sbjct 3552 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCGGCAAAGAT 3504 >seq3965 Length=13966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || || ||||| || || |||||| ||| ||||| |||| Sbjct 1551 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 1610 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | ||| || || Sbjct 1611 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1670 Query 192534 CATT 192537 |||| Sbjct 1671 CATT 1674 >seq13787 Length=5932 Score = 96.9 bits (106), Expect = 7e-15 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 || ||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 754 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 813 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| || Sbjct 814 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 873 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 874 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 931 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATA 50057 ||| | ||||| | ||||||||| |||||||| |||||| || | | |||| Sbjct 932 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATA 991 Query 50058 GCTTTAAATAA 50068 || |||||||| Sbjct 992 GCATTAAATAA 1002 >seq22378 Length=3416 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || || ||||| || || |||||| ||| || || |||| Sbjct 1811 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACGTTCTCAATAGT 1870 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | ||| || || Sbjct 1871 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1930 Query 192534 CATT 192537 |||| Sbjct 1931 CATT 1934 >seq12969 Length=6291 Score = 93.3 bits (102), Expect = 8e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 842 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 901 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||| |||||||| |||||||| Sbjct 902 TATAATCAGCCAAAGTGCGTCCATCCTCCAACTGTTTACCGGCAAAGAT 950 >seq27347 Length=2531 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 202 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 143 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 142 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 83 Query 49940 GAATATACCCTCGAC 49954 |||||||||||| || Sbjct 82 GAATATACCCTCAAC 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984084675595350