Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 113 8e-20
seq3049 107 3e-18
seq27688 105 1e-17
seq13787 100 5e-16
seq27347 98.7 2e-15
seq3965 93.3 8e-14
seq22378 89.7 9e-13
>seq2786
Length=16508
Score = 113 bits (124), Expect = 8e-20
Identities = 179/253 (71%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 4169 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 4228
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | ||||
Sbjct 4229 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAA 4288
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 4289 AAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 4346
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357
||| | ||||| | |||||||| |||||||| |||||| || | | ||
Sbjct 4347 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 4406
Query 39358 TAGCTTTAAATAA 39370
|||| ||||||||
Sbjct 4407 TAGCATTAAATAA 4419
>seq3049
Length=15854
Score = 107 bits (118), Expect = 3e-18
Identities = 162/227 (71%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 13775 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 13834
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 13835 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 13894
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 13895 AAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTT 13952
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344
||| | ||||| | |||||||| |||||||| |||||| ||
Sbjct 13953 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 13999
>seq27688
Length=2484
Score = 105 bits (116), Expect = 1e-17
Identities = 163/228 (71%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 379 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 320
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 319 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 260
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 259 AAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 202
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttt-tttGATAGAA 39344
||| | ||||| | |||||||| |||||||| ||||||| ||
Sbjct 201 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAA 154
>seq13787
Length=5932
Score = 100 bits (110), Expect = 5e-16
Identities = 176/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||| ||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 752 AGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 811
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| | || | || || |||||||| |||| |||||||| | |||
Sbjct 812 GTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 871
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 872 AAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 929
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357
||| | ||||| | |||||||| |||||||| |||||| || | | ||
Sbjct 930 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 989
Query 39358 TAGCTTTAAATAA 39370
|||| ||||||||
Sbjct 990 TAGCATTAAATAA 1002
>seq27347
Length=2531
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 204 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 145
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 144 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 85
Query 39240 AAGAATATACCCTCCAC 39256
|||||||||||||| ||
Sbjct 84 AAGAATATACCCTCAAC 68
>seq3965
Length=13966
Score = 93.3 bits (102), Expect = 8e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| || |||||||| || || ||||| || || |||||| ||| ||||| |||||
Sbjct 1551 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 1610
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| || | ||| ||||| ||||| || ||||||||||| || ||||| | || || ||
Sbjct 1611 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1670
Query 172067 CATT 172070
||||
Sbjct 1671 CATT 1674
>seq22378
Length=3416
Score = 89.7 bits (98), Expect = 9e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| || |||||||| || || ||||| || || |||||| ||| || || |||||
Sbjct 1811 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACGTTCTCAATAGT 1870
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| || | ||| ||||| ||||| || ||||||||||| || ||||| | || || ||
Sbjct 1871 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1930
Query 172067 CATT 172070
||||
Sbjct 1931 CATT 1934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904781401657800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |