Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2786 113 8e-20 seq3049 107 3e-18 seq27688 105 1e-17 seq13787 100 5e-16 seq27347 98.7 2e-15 seq3965 93.3 8e-14 seq22378 89.7 9e-13 >seq2786 Length=16508 Score = 113 bits (124), Expect = 8e-20 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 4169 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 4228 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | |||| Sbjct 4229 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAA 4288 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 4289 AAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 4346 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357 ||| | ||||| | |||||||| |||||||| |||||| || | | || Sbjct 4347 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 4406 Query 39358 TAGCTTTAAATAA 39370 |||| |||||||| Sbjct 4407 TAGCATTAAATAA 4419 >seq3049 Length=15854 Score = 107 bits (118), Expect = 3e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 13775 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 13834 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 13835 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 13894 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 13895 AAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTT 13952 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344 ||| | ||||| | |||||||| |||||||| |||||| || Sbjct 13953 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 13999 >seq27688 Length=2484 Score = 105 bits (116), Expect = 1e-17 Identities = 163/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 379 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 320 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 319 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 260 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 259 AAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 202 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttt-tttGATAGAA 39344 ||| | ||||| | |||||||| |||||||| ||||||| || Sbjct 201 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAA 154 >seq13787 Length=5932 Score = 100 bits (110), Expect = 5e-16 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||| ||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 752 AGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 811 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| Sbjct 812 GTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 871 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 872 AAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 929 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357 ||| | ||||| | |||||||| |||||||| |||||| || | | || Sbjct 930 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 989 Query 39358 TAGCTTTAAATAA 39370 |||| |||||||| Sbjct 990 TAGCATTAAATAA 1002 >seq27347 Length=2531 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 204 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 145 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 144 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 85 Query 39240 AAGAATATACCCTCCAC 39256 |||||||||||||| || Sbjct 84 AAGAATATACCCTCAAC 68 >seq3965 Length=13966 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || |||||||| || || ||||| || || |||||| ||| ||||| ||||| Sbjct 1551 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 1610 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | || || || Sbjct 1611 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1670 Query 172067 CATT 172070 |||| Sbjct 1671 CATT 1674 >seq22378 Length=3416 Score = 89.7 bits (98), Expect = 9e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || |||||||| || || ||||| || || |||||| ||| || || ||||| Sbjct 1811 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACGTTCTCAATAGT 1870 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | || || || Sbjct 1871 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1930 Query 172067 CATT 172070 |||| Sbjct 1931 CATT 1934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904781401657800