Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq18744 86.0 2e-11
seq8605 86.0 2e-11
>seq18744
Length=4294
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 1705 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 1646
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | |||| | ||||||
Sbjct 1645 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 1589
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||| ||
Sbjct 1588 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 1556
>seq8605
Length=8806
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 3073 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 3014
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | |||| | ||||||
Sbjct 3013 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 2957
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||| ||
Sbjct 2956 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471226581983917
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |