Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18744 86.0 2e-11 seq8605 86.0 2e-11 >seq18744 Length=4294 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| | Sbjct 1705 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 1646 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||||| || |||||| ||| | | | ||| | |||| | |||||| Sbjct 1645 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 1589 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779 |||||| |||||| ||||| |||||||| || Sbjct 1588 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 1556 >seq8605 Length=8806 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| | Sbjct 3073 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 3014 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||||| || |||||| ||| | | | ||| | |||| | |||||| Sbjct 3013 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 2957 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779 |||||| |||||| ||||| |||||||| || Sbjct 2956 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471226581983917