Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq8275 95.1 1e-14 seq5333 91.5 1e-13 seq5142 87.8 2e-12 seq18228 86.0 6e-12 seq12969 86.0 6e-12 seq1624 86.0 6e-12 seq15966 84.2 2e-11 seq9420 84.2 2e-11 seq1871 84.2 2e-11 seq2634 82.4 7e-11 seq695 82.4 7e-11 >seq8275 Length=9039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| ||||||| || ||||||||||| ||||| || || | Sbjct 3965 GATGCAGATTTTTGTCAAAACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCATC 4024 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 4025 CGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGATCA 4084 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 4085 ACAGCGTTTG 4094 >seq5333 Length=11984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| |||| || || ||||||||||| ||||| || || | Sbjct 8045 GATGCAGATTTTTGTCAAAACTTTAACTGGAAAGACTATTACGCTTGAAGTTGAGGCATC 8104 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 8105 CGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 8164 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 8165 ACAGCGTTTG 8174 >seq5142 Length=12213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||| |||| | || || || || || || || || || || ||||| ||||| | Sbjct 7031 GATGCAGACCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCTTC 6972 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || ||||| || |||||||||||||| ||||| ||||| Sbjct 6971 TGATACCATTGAAAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATCCCTCCTGATCA 6912 Query 24823 ACAACGTTTGATCTTT 24838 ||||| ||| ||||| Sbjct 6911 GCAACGATTGGTCTTT 6896 >seq18228 Length=4442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || ||||||| || ||||||||||| ||||| || || | Sbjct 2963 GATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTC 3022 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 3023 TGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 3082 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 3083 ACAGCGTTTG 3092 >seq12969 Length=6291 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || ||||||| || ||||||||||| ||||| || || | Sbjct 1488 GATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTC 1429 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 1428 TGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 1369 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 1368 ACAGCGTTTG 1359 >seq1624 Length=20192 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 138152 ATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTC 138211 |||||| || ||||| | ||||||| | ||||| || | || ||||||||||| Sbjct 11593 ATTTATTGACCGTAAATTGAATGGCATTGACAGCTGGCCGTGTACGCAAATAATACATTC 11652 Query 138212 CCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 ||||||| | ||||||||||| || | | || || || || | | || || || | Sbjct 11653 CCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAGGTAATTTTTGCATATGTTG 11712 Query 138272 GTTTCGCCAGAAATATG----TTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCA 138327 | | ||| |||||| || || |||||||| || ||||| |||| |||||||| Sbjct 11713 GAT----CAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATAAAAGGAGCTCGATCA 11768 Query 138328 ATGGCCATGTTAATTAAATTTTTACTTTT--CATCTCCCACACGGTCTTGTATA 138379 | ||||| || || ||||| || | || ||||| || || ||||||| Sbjct 11769 ACTGCCATTTTGAT--AATTTCACGTTGTGGAATTTCCCAAACAGTTTTGTATA 11820 >seq15966 Length=5121 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| ||||| || || || | Sbjct 805 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 864 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 865 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 923 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 924 ACAGCGTTTG 933 >seq9420 Length=8200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| ||||| || || || | Sbjct 7280 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 7221 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 7220 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 7162 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 7161 ACAGCGTTTG 7152 >seq1871 Length=19151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| ||||| || || || | Sbjct 11468 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 11527 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 11528 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 11586 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 11587 ACAGCGTTTG 11596 >seq2634 Length=16880 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| ||||| | Sbjct 1491 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCGTC 1432 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 1431 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 1372 Query 24823 ACAACGTTTG 24832 ||||| ||| Sbjct 1371 GCAACGATTG 1362 >seq695 Length=26773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| ||||| | Sbjct 12598 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACCCTAGAAGTGGAAGCGTC 12657 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 12658 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 12717 Query 24823 ACAACGTTTG 24832 ||||| ||| Sbjct 12718 GCAACGATTG 12727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449721346991480