Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 95.1 1e-14
seq5333 91.5 1e-13
seq5142 87.8 2e-12
seq18228 86.0 6e-12
seq12969 86.0 6e-12
seq1624 86.0 6e-12
seq15966 84.2 2e-11
seq9420 84.2 2e-11
seq1871 84.2 2e-11
seq2634 82.4 7e-11
seq695 82.4 7e-11
>seq8275
Length=9039
Score = 95.1 bits (104), Expect = 1e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | ||||| ||||||| || ||||||||||| ||||| || || |
Sbjct 3965 GATGCAGATTTTTGTCAAAACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCATC 4024
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | |||| || || ||||| ||||| || || || || || || |||||
Sbjct 4025 CGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGATCA 4084
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 4085 ACAGCGTTTG 4094
>seq5333
Length=11984
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | ||||| |||| || || ||||||||||| ||||| || || |
Sbjct 8045 GATGCAGATTTTTGTCAAAACTTTAACTGGAAAGACTATTACGCTTGAAGTTGAGGCATC 8104
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | |||| || || ||||| ||||| || || || || || || |||||
Sbjct 8105 CGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 8164
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 8165 ACAGCGTTTG 8174
>seq5142
Length=12213
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||| |||| | || || || || || || || || || || ||||| ||||| |
Sbjct 7031 GATGCAGACCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCTTC 6972
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | |||| || || ||||| || |||||||||||||| ||||| |||||
Sbjct 6971 TGATACCATTGAAAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATCCCTCCTGATCA 6912
Query 24823 ACAACGTTTGATCTTT 24838
||||| ||| |||||
Sbjct 6911 GCAACGATTGGTCTTT 6896
>seq18228
Length=4442
Score = 86.0 bits (94), Expect = 6e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || || ||||||| || ||||||||||| ||||| || || |
Sbjct 2963 GATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTC 3022
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | |||| || || ||||| ||||| || || || || || || |||||
Sbjct 3023 TGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 3082
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 3083 ACAGCGTTTG 3092
>seq12969
Length=6291
Score = 86.0 bits (94), Expect = 6e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || || ||||||| || ||||||||||| ||||| || || |
Sbjct 1488 GATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTC 1429
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | |||| || || ||||| ||||| || || || || || || |||||
Sbjct 1428 TGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 1369
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 1368 ACAGCGTTTG 1359
>seq1624
Length=20192
Score = 86.0 bits (94), Expect = 6e-12
Identities = 161/234 (69%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 138152 ATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTC 138211
|||||| || ||||| | ||||||| | ||||| || | || |||||||||||
Sbjct 11593 ATTTATTGACCGTAAATTGAATGGCATTGACAGCTGGCCGTGTACGCAAATAATACATTC 11652
Query 138212 CCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271
||||||| | ||||||||||| || | | || || || || | | || || || |
Sbjct 11653 CCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAGGTAATTTTTGCATATGTTG 11712
Query 138272 GTTTCGCCAGAAATATG----TTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCA 138327
| | ||| |||||| || || |||||||| || ||||| |||| ||||||||
Sbjct 11713 GAT----CAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATAAAAGGAGCTCGATCA 11768
Query 138328 ATGGCCATGTTAATTAAATTTTTACTTTT--CATCTCCCACACGGTCTTGTATA 138379
| ||||| || || ||||| || | || ||||| || || |||||||
Sbjct 11769 ACTGCCATTTTGAT--AATTTCACGTTGTGGAATTTCCCAAACAGTTTTGTATA 11820
>seq15966
Length=5121
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || || || ||||| ||||||||||| ||||| || || || |
Sbjct 805 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 864
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || || | ||| ||||| || ||||| ||||| || || || || |||||
Sbjct 865 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 923
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 924 ACAGCGTTTG 933
>seq9420
Length=8200
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || || || ||||| ||||||||||| ||||| || || || |
Sbjct 7280 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 7221
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || || | ||| ||||| || ||||| ||||| || || || || |||||
Sbjct 7220 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 7162
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 7161 ACAGCGTTTG 7152
>seq1871
Length=19151
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || || || ||||| ||||||||||| ||||| || || || |
Sbjct 11468 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 11527
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || || | ||| ||||| || ||||| ||||| || || || || |||||
Sbjct 11528 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 11586
Query 24823 ACAACGTTTG 24832
||| ||||||
Sbjct 11587 ACAGCGTTTG 11596
>seq2634
Length=16880
Score = 82.4 bits (90), Expect = 7e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || || || || || || || || ||||| ||||| |
Sbjct 1491 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCGTC 1432
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | || || ||||| || |||||||||||||| ||||| |||||
Sbjct 1431 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 1372
Query 24823 ACAACGTTTG 24832
||||| |||
Sbjct 1371 GCAACGATTG 1362
>seq695
Length=26773
Score = 82.4 bits (90), Expect = 7e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || || || || || || || || ||||| ||||| |
Sbjct 12598 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACCCTAGAAGTGGAAGCGTC 12657
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | || || ||||| || |||||||||||||| ||||| |||||
Sbjct 12658 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 12717
Query 24823 ACAACGTTTG 24832
||||| |||
Sbjct 12718 GCAACGATTG 12727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449721346991480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |