Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18458 109 4e-19 seq5365 109 4e-19 seq3965 109 4e-19 seq567 109 4e-19 seq22378 104 2e-17 seq5333 93.3 3e-14 seq5142 93.3 3e-14 seq2634 93.3 3e-14 seq695 93.3 3e-14 seq18228 89.7 4e-13 seq12969 89.7 4e-13 seq15966 87.8 1e-12 seq9420 87.8 1e-12 seq1871 87.8 1e-12 >seq18458 Length=4373 Score = 109 bits (120), Expect = 4e-19 Identities = 108/137 (79%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 29652 ATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGA 29710 ||| | ||| | |||||||| |||||||| ||||| |||||||| |||||| | |||| Sbjct 4038 ATAAACCAAGCGCTGCTGATCTGGCGGAATCCCCTCCTTGTCTTG-AATTTTGGCCTTGA 4096 Query 29711 CAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTT 29770 || |||| | |||||||| || ||||||||||| ||||| || |||||||| || | Sbjct 4097 CATTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTGATAGTCTTTCCAGTTAAAGTCT 4156 Query 29771 TAACAAATATCTGCATT 29787 | ||||| || |||||| Sbjct 4157 TGACAAAGATTTGCATT 4173 >seq5365 Length=11941 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 404 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 346 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||||||||| || ||||| | ||||| ||||| ||||| Sbjct 345 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 286 Query 29784 CATT 29787 |||| Sbjct 285 CATT 282 >seq3965 Length=13966 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| |||||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 1014 TGCTGATCTGGCGGAATCCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 1072 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||| ||||| || |||||||| || || ||||| || || Sbjct 1073 GTCAGATGCCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTCTTGACAAAGATTTG 1132 Query 29784 CATT 29787 |||| Sbjct 1133 CATT 1136 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||||||||| || |||||| | ||| ||| | || | ||| Sbjct 1552 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATTTTAGCTTTCACATTCTCAATAGT 1610 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||||||||| |||||||| ||||| || ||||| ||||| || || Sbjct 1611 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1670 Query 29784 CATT 29787 |||| Sbjct 1671 CATT 1674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | || Sbjct 1284 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 1342 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || ||||| ||||||||||| ||||| || || || ||||| || || || Sbjct 1343 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 1402 Query 29784 CATT 29787 |||| Sbjct 1403 CATT 1406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 || || |||||||| ||||| || || || || |||||| | |||||| |||| | || Sbjct 1825 TGTTGGTCCGGCGGGATACCTTCCTTATCCTG-AATTTTGGCCTTGACATTTTCAATCGT 1883 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 1884 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 1943 Query 29784 CATTTT 29789 ||| || Sbjct 1944 CATATT 1949 >seq567 Length=28520 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 7450 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 7392 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||||||||| || ||||| | ||||| ||||| ||||| Sbjct 7391 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 7332 Query 29784 CATT 29787 |||| Sbjct 7331 CATT 7328 Score = 95.1 bits (104), Expect = 9e-15 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | || Sbjct 6637 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 6579 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 6578 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 6519 Query 29784 CATTTT 29789 ||| || Sbjct 6518 CATATT 6513 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | ||| Sbjct 6914 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 6856 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||| ||||| ||||| || || || | || |||||||| || || Sbjct 6855 ATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTTG 6796 Query 29784 CATT 29787 |||| Sbjct 6795 CATT 6792 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || |||||||| |||||||||||||| |||||| | ||||| |||| | || Sbjct 7181 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATCGT 7123 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || || || ||||| ||||| ||||| || || || ||||| || || || Sbjct 7122 ATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 7063 Query 29784 CATT 29787 |||| Sbjct 7062 CATT 7059 >seq22378 Length=3416 Score = 104 bits (114), Expect = 2e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||||||||| || |||||| | ||| || | || | ||| Sbjct 1812 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATTTTAGCTTTCACGTTCTCAATAGT 1870 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||||||||| |||||||| ||||| || ||||| ||||| || || Sbjct 1871 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1930 Query 29784 CATT 29787 |||| Sbjct 1931 CATT 1934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | || Sbjct 1545 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 1603 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || ||||| ||||||||||| ||||| || || || ||||| || || || Sbjct 1604 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 1663 Query 29784 CATT 29787 |||| Sbjct 1664 CATT 1667 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 || || |||||||| ||||| || || || || |||||| | |||||| |||| | || Sbjct 2085 TGTTGGTCCGGCGGGATACCTTCCTTATCCTG-AATTTTGGCCTTGACATTTTCAATCGT 2143 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 2144 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 2203 Query 29784 CATTTT 29789 ||| || Sbjct 2204 CATATT 2209 >seq5333 Length=11984 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 8167 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 8109 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || || |||||||| || ||||| || |||||||| ||||| ||||| ||||| Sbjct 8108 GTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCAGTTAAAGTTTTGACAAAAATCTG 8049 Query 29784 CAT 29786 ||| Sbjct 8048 CAT 8046 >seq5142 Length=12213 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 7441 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 7499 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 7500 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 7559 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 7560 AGATCTGCATATT 7572 >seq2634 Length=16880 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 1901 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 1959 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 1960 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 2019 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 2020 AGATCTGCATATT 2032 >seq695 Length=26773 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 12185 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 12127 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 12126 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 12067 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 12066 AGATCTGCATATT 12054 >seq18228 Length=4442 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 3085 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 3027 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 3026 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 2967 Query 29784 CAT 29786 ||| Sbjct 2966 CAT 2964 >seq12969 Length=6291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 1366 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 1424 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 1425 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 1484 Query 29784 CAT 29786 ||| Sbjct 1485 CAT 1487 >seq15966 Length=5121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 926 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 868 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 867 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 808 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 807 CATATTTAA 799 >seq9420 Length=8200 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 7159 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 7217 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 7218 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 7277 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 7278 CATATTTAA 7286 >seq1871 Length=19151 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 11589 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 11531 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 11530 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 11471 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 11470 CATATTTAA 11462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385072058424081