Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq18458 109 4e-19
seq5365 109 4e-19
seq3965 109 4e-19
seq567 109 4e-19
seq22378 104 2e-17
seq5333 93.3 3e-14
seq5142 93.3 3e-14
seq2634 93.3 3e-14
seq695 93.3 3e-14
seq18228 89.7 4e-13
seq12969 89.7 4e-13
seq15966 87.8 1e-12
seq9420 87.8 1e-12
seq1871 87.8 1e-12
>seq18458
Length=4373
Score = 109 bits (120), Expect = 4e-19
Identities = 108/137 (79%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 29652 ATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGA 29710
||| | ||| | |||||||| |||||||| ||||| |||||||| |||||| | ||||
Sbjct 4038 ATAAACCAAGCGCTGCTGATCTGGCGGAATCCCCTCCTTGTCTTG-AATTTTGGCCTTGA 4096
Query 29711 CAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTT 29770
|| |||| | |||||||| || ||||||||||| ||||| || |||||||| || |
Sbjct 4097 CATTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTGATAGTCTTTCCAGTTAAAGTCT 4156
Query 29771 TAACAAATATCTGCATT 29787
| ||||| || ||||||
Sbjct 4157 TGACAAAGATTTGCATT 4173
>seq5365
Length=11941
Score = 109 bits (120), Expect = 4e-19
Identities = 100/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | ||
Sbjct 404 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 346
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || ||||||||||||||||| || ||||| | ||||| ||||| |||||
Sbjct 345 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 286
Query 29784 CATT 29787
||||
Sbjct 285 CATT 282
>seq3965
Length=13966
Score = 109 bits (120), Expect = 4e-19
Identities = 100/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|||||||| |||||||| ||||| |||||||| |||||| | |||||| |||| | ||
Sbjct 1014 TGCTGATCTGGCGGAATCCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 1072
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || ||||||||||| ||||| || |||||||| || || ||||| || ||
Sbjct 1073 GTCAGATGCCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTCTTGACAAAGATTTG 1132
Query 29784 CATT 29787
||||
Sbjct 1133 CATT 1136
Score = 109 bits (120), Expect = 4e-19
Identities = 100/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| || ||||||||||||||||| || |||||| | ||| ||| | || | |||
Sbjct 1552 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATTTTAGCTTTCACATTCTCAATAGT 1610
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| ||||||||||| |||||||| ||||| || ||||| ||||| || ||
Sbjct 1611 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1670
Query 29784 CATT 29787
||||
Sbjct 1671 CATT 1674
Score = 91.5 bits (100), Expect = 1e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | ||
Sbjct 1284 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 1342
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || || ||||| ||||||||||| ||||| || || || ||||| || || ||
Sbjct 1343 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 1402
Query 29784 CATT 29787
||||
Sbjct 1403 CATT 1406
Score = 86.0 bits (94), Expect = 5e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|| || |||||||| ||||| || || || || |||||| | |||||| |||| | ||
Sbjct 1825 TGTTGGTCCGGCGGGATACCTTCCTTATCCTG-AATTTTGGCCTTGACATTTTCAATCGT 1883
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| ||| ||||||||||| || || || ||||| || || || || || |||||
Sbjct 1884 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 1943
Query 29784 CATTTT 29789
||| ||
Sbjct 1944 CATATT 1949
>seq567
Length=28520
Score = 109 bits (120), Expect = 4e-19
Identities = 100/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | ||
Sbjct 7450 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 7392
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || ||||||||||||||||| || ||||| | ||||| ||||| |||||
Sbjct 7391 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 7332
Query 29784 CATT 29787
||||
Sbjct 7331 CATT 7328
Score = 95.1 bits (104), Expect = 9e-15
Identities = 98/126 (78%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | ||
Sbjct 6637 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 6579
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| ||| ||||||||||| || || || ||||| || || || || || |||||
Sbjct 6578 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 6519
Query 29784 CATTTT 29789
||| ||
Sbjct 6518 CATATT 6513
Score = 82.4 bits (90), Expect = 6e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | |||
Sbjct 6914 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 6856
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| ||||| ||||| ||||| || || || | || |||||||| || ||
Sbjct 6855 ATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTTG 6796
Query 29784 CATT 29787
||||
Sbjct 6795 CATT 6792
Score = 82.4 bits (90), Expect = 6e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||| || |||||||| |||||||||||||| |||||| | ||||| |||| | ||
Sbjct 7181 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATCGT 7123
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || || || || ||||| ||||| ||||| || || || ||||| || || ||
Sbjct 7122 ATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 7063
Query 29784 CATT 29787
||||
Sbjct 7062 CATT 7059
>seq22378
Length=3416
Score = 104 bits (114), Expect = 2e-17
Identities = 99/124 (80%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| || ||||||||||||||||| || |||||| | ||| || | || | |||
Sbjct 1812 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATTTTAGCTTTCACGTTCTCAATAGT 1870
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| ||||||||||| |||||||| ||||| || ||||| ||||| || ||
Sbjct 1871 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1930
Query 29784 CATT 29787
||||
Sbjct 1931 CATT 1934
Score = 91.5 bits (100), Expect = 1e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | ||
Sbjct 1545 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 1603
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || || ||||| ||||||||||| ||||| || || || ||||| || || ||
Sbjct 1604 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 1663
Query 29784 CATT 29787
||||
Sbjct 1664 CATT 1667
Score = 86.0 bits (94), Expect = 5e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|| || |||||||| ||||| || || || || |||||| | |||||| |||| | ||
Sbjct 2085 TGTTGGTCCGGCGGGATACCTTCCTTATCCTG-AATTTTGGCCTTGACATTTTCAATCGT 2143
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| ||| ||||||||||| || || || ||||| || || || || || |||||
Sbjct 2144 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 2203
Query 29784 CATTTT 29789
||| ||
Sbjct 2204 CATATT 2209
>seq5333
Length=11984
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/123 (78%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 8167 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 8109
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
||| || || |||||||| || ||||| || |||||||| ||||| ||||| |||||
Sbjct 8108 GTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCAGTTAAAGTTTTGACAAAAATCTG 8049
Query 29784 CAT 29786
|||
Sbjct 8048 CAT 8046
>seq5142
Length=12213
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || ||| |||
Sbjct 7441 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 7499
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 7500 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 7559
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 7560 AGATCTGCATATT 7572
>seq2634
Length=16880
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || ||| |||
Sbjct 1901 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 1959
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 1960 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 2019
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 2020 AGATCTGCATATT 2032
>seq695
Length=26773
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || ||| |||
Sbjct 12185 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 12127
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 12126 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 12067
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 12066 AGATCTGCATATT 12054
>seq18228
Length=4442
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 3085 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 3027
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || |||||||| || ||||| || || ||||| || || ||||| |||||
Sbjct 3026 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 2967
Query 29784 CAT 29786
|||
Sbjct 2966 CAT 2964
>seq12969
Length=6291
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 1366 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 1424
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || |||||||| || ||||| || || ||||| || || ||||| |||||
Sbjct 1425 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 1484
Query 29784 CAT 29786
|||
Sbjct 1485 CAT 1487
>seq15966
Length=5121
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 926 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 868
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 867 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 808
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 807 CATATTTAA 799
>seq9420
Length=8200
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 7159 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 7217
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 7218 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 7277
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 7278 CATATTTAA 7286
>seq1871
Length=19151
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 11589 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 11531
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 11530 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 11471
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 11470 CATATTTAA 11462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385072058424081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |