Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq22432 84.2 3e-11 seq18744 84.2 3e-11 seq8605 84.2 3e-11 seq68 84.2 3e-11 seq23 84.2 3e-11 >seq22432 Length=3406 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479 ||||||||||| ||||| || | || |||| |||| ||||| |||||||||| Sbjct 2973 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 2914 Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539 || | || || | || || || | ||||| || |||||| | |||||| | || Sbjct 2913 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2854 Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 2853 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2800 >seq18744 Length=4294 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025 ||||||||| || | || | | | |||||||||||||||||||| ||||||||||||||| Sbjct 1634 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 1693 Query 52026 CATGTTCCTCAATC 52039 ||| | || ||||| Sbjct 1694 CATTTACCGCAATC 1707 >seq8605 Length=8806 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025 ||||||||| || | || | | | |||||||||||||||||||| ||||||||||||||| Sbjct 3002 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 3061 Query 52026 CATGTTCCTCAATC 52039 ||| | || ||||| Sbjct 3062 CATTTACCGCAATC 3075 >seq68 Length=45473 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479 ||||||||||| ||||| || | || |||| |||| ||||| |||||||||| Sbjct 38006 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 37947 Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539 || | || || | || || || | ||||| || |||||| | |||||| | || Sbjct 37946 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 37887 Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 37886 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 37833 >seq23 Length=57481 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479 ||||||||||| ||||| || | || |||| |||| ||||| |||||||||| Sbjct 2459 TGGAATTGGAAAAAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 2518 Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539 || | || || | || || || | ||||| || |||||| | |||||| | || Sbjct 2519 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2578 Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 2579 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634928761235480