Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq23 111 2e-19 seq22432 107 3e-18 seq68 107 3e-18 >seq23 Length=57481 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046 ||| ||||||| |||||| | | ||||||| ||||| ||||| |||||||||| Sbjct 2459 TGGAATTGGAAAAAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 2518 Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106 | ||||||| || || || || ||||| ||||||||| | |||||| |||| Sbjct 2519 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2578 Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160 | |||||| ||||||||||| |||| | |||||||| ||||| ||||||| Sbjct 2579 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2632 >seq22432 Length=3406 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046 ||| ||||||| |||||| | | || |||| ||||| ||||| |||||||||| Sbjct 2973 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 2914 Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106 | ||||||| || || || || ||||| ||||||||| | |||||| |||| Sbjct 2913 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2854 Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160 | |||||| ||||||||||| |||| | |||||||| ||||| ||||||| Sbjct 2853 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2800 >seq68 Length=45473 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046 ||| ||||||| |||||| | | || |||| ||||| ||||| |||||||||| Sbjct 38006 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 37947 Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106 | ||||||| || || || || ||||| ||||||||| | |||||| |||| Sbjct 37946 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 37887 Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160 | |||||| ||||||||||| |||| | |||||||| ||||| ||||||| Sbjct 37886 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 37833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655023285869000