Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_023613.1
Length=204815
Score E
Sequences producing significant alignments: (Bits) Value
seq23 111 2e-19
seq22432 107 3e-18
seq68 107 3e-18
>seq23
Length=57481
Score = 111 bits (122), Expect = 2e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046
||| ||||||| |||||| | | ||||||| ||||| ||||| ||||||||||
Sbjct 2459 TGGAATTGGAAAAAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 2518
Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106
| ||||||| || || || || ||||| ||||||||| | |||||| ||||
Sbjct 2519 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2578
Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160
| |||||| ||||||||||| |||| | |||||||| ||||| |||||||
Sbjct 2579 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2632
>seq22432
Length=3406
Score = 107 bits (118), Expect = 3e-18
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046
||| ||||||| |||||| | | || |||| ||||| ||||| ||||||||||
Sbjct 2973 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 2914
Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106
| ||||||| || || || || ||||| ||||||||| | |||||| ||||
Sbjct 2913 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2854
Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160
| |||||| ||||||||||| |||| | |||||||| ||||| |||||||
Sbjct 2853 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2800
>seq68
Length=45473
Score = 107 bits (118), Expect = 3e-18
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046
||| ||||||| |||||| | | || |||| ||||| ||||| ||||||||||
Sbjct 38006 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 37947
Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106
| ||||||| || || || || ||||| ||||||||| | |||||| ||||
Sbjct 37946 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 37887
Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160
| |||||| ||||||||||| |||| | |||||||| ||||| |||||||
Sbjct 37886 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 37833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655023285869000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |