Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq13746 104 6e-17 seq55 104 6e-17 seq18744 98.7 2e-15 seq8605 98.7 2e-15 seq1754 87.8 4e-12 seq17565 84.2 5e-11 >seq13746 Length=5950 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 2080 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 2139 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 2140 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 2199 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| ||||| |||| ||||| Sbjct 2200 GGAGATGAAATGAATTTGCATTTACCGCAATC 2231 >seq55 Length=48044 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 29750 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 29809 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 29810 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 29869 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| ||||| |||| ||||| Sbjct 29870 GGAGATGAAATGAATTTGCATTTACCGCAATC 29901 >seq18744 Length=4294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 1556 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 1615 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 1616 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 1675 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| | ||| |||| ||||| Sbjct 1676 GGAGATGAAATGAATTTACATTTACCGCAATC 1707 >seq8605 Length=8806 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 2924 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 2983 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 2984 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 3043 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| | ||| |||| ||||| Sbjct 3044 GGAGATGAAATGAATTTACATTTACCGCAATC 3075 >seq1754 Length=19645 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 ||| |||| |||| |||| | |||||||||| || || || || |||||||||||||||| Sbjct 16202 TGAAATTTAGATTTAATGAATGTGCTTGTACTCCATACAACGCTGATTTTGATGGAGATG 16143 Query 305463 AAATGAATATGCATGTACCTCAATCA 305488 |||||||| ||||| | || ||| || Sbjct 16142 AAATGAATGTGCATTTTCCACAAACA 16117 >seq17565 Length=4620 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 ||| |||| |||| |||| | |||||||||| || || || || ||||||||||| |||| Sbjct 3283 TGAAATTTAGATTTAATGAATGTGCTTGTACTCCATACAACGCTGATTTTGATGGCGATG 3224 Query 305463 AAATGAATATGCATGTACCTCAATCA 305488 |||||||| ||||| | || ||| || Sbjct 3223 AAATGAATGTGCATTTTCCACAAACA 3198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186336227531701