Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq13746 104 6e-17
seq55 104 6e-17
seq18744 98.7 2e-15
seq8605 98.7 2e-15
seq1754 87.8 4e-12
seq17565 84.2 5e-11
>seq13746
Length=5950
Score = 104 bits (114), Expect = 6e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|| ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| |
Sbjct 2080 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 2139
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455
|| | | || ||||| | ||| | || | || ||||||||||| |||||||||
Sbjct 2140 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 2199
Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487
||||||||||||||| ||||| |||| |||||
Sbjct 2200 GGAGATGAAATGAATTTGCATTTACCGCAATC 2231
>seq55
Length=48044
Score = 104 bits (114), Expect = 6e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|| ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| |
Sbjct 29750 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 29809
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455
|| | | || ||||| | ||| | || | || ||||||||||| |||||||||
Sbjct 29810 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 29869
Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487
||||||||||||||| ||||| |||| |||||
Sbjct 29870 GGAGATGAAATGAATTTGCATTTACCGCAATC 29901
>seq18744
Length=4294
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|| ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| |
Sbjct 1556 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 1615
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455
|| | | || ||||| | ||| | || | || ||||||||||| |||||||||
Sbjct 1616 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 1675
Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487
||||||||||||||| | ||| |||| |||||
Sbjct 1676 GGAGATGAAATGAATTTACATTTACCGCAATC 1707
>seq8605
Length=8806
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|| ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| |
Sbjct 2924 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 2983
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455
|| | | || ||||| | ||| | || | || ||||||||||| |||||||||
Sbjct 2984 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 3043
Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487
||||||||||||||| | ||| |||| |||||
Sbjct 3044 GGAGATGAAATGAATTTACATTTACCGCAATC 3075
>seq1754
Length=19645
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462
||| |||| |||| |||| | |||||||||| || || || || ||||||||||||||||
Sbjct 16202 TGAAATTTAGATTTAATGAATGTGCTTGTACTCCATACAACGCTGATTTTGATGGAGATG 16143
Query 305463 AAATGAATATGCATGTACCTCAATCA 305488
|||||||| ||||| | || ||| ||
Sbjct 16142 AAATGAATGTGCATTTTCCACAAACA 16117
>seq17565
Length=4620
Score = 84.2 bits (92), Expect = 5e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462
||| |||| |||| |||| | |||||||||| || || || || ||||||||||| ||||
Sbjct 3283 TGAAATTTAGATTTAATGAATGTGCTTGTACTCCATACAACGCTGATTTTGATGGCGATG 3224
Query 305463 AAATGAATATGCATGTACCTCAATCA 305488
|||||||| ||||| | || ||| ||
Sbjct 3223 AAATGAATGTGCATTTTCCACAAACA 3198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186336227531701
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |