Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq19449 96.9 8e-15
seq10902 96.9 8e-15
seq8650 96.9 8e-15
seq7966 96.9 8e-15
seq16244 86.0 1e-11
seq6254 86.0 1e-11
seq5142 86.0 1e-11
seq2634 86.0 1e-11
seq695 86.0 1e-11
seq27424 84.2 5e-11
>seq19449
Length=4096
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 850 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 909
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
|| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 910 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 969
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||||||||| ||||| | || ||||| || |||||
Sbjct 970 ATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAA 1019
>seq10902
Length=7311
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 5807 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 5866
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 5867 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTA 5926
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || || || ||||| ||||| | || |||||||| |||||
Sbjct 5927 ATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAA 5976
>seq8650
Length=8768
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 4515 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 4574
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 4575 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 4634
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 4635 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 4684
>seq7966
Length=9287
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 5328 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 5269
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 5268 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 5209
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 5208 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 5159
>seq16244
Length=5026
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 35 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 94
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 95 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 126
>seq6254
Length=10896
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 10815 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 10756
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 10755 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 10724
>seq5142
Length=12213
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 6858 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 6799
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 6798 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 6767
>seq2634
Length=16880
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 1316 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 1257
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 1256 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 1225
>seq695
Length=26773
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 12773 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 12832
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 12833 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 12864
>seq27424
Length=2520
Score = 84.2 bits (92), Expect = 5e-11
Identities = 123/172 (72%), Gaps = 3/172 (2%)
Strand=Plus/Minus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 544 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 485
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC--GGACGCTCAAAGAC 206296
||| || ||| ||||| || || || || || || || ||| ||| | |
Sbjct 484 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCCGGGAGCAGCAACGTC 425
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
| |||||||| || ||||| ||||| ||||| | || || |||| |||||
Sbjct 424 TCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTATCCGACTACAA 373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181346232102061
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |