Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq19449 96.9 8e-15 seq10902 96.9 8e-15 seq8650 96.9 8e-15 seq7966 96.9 8e-15 seq16244 86.0 1e-11 seq6254 86.0 1e-11 seq5142 86.0 1e-11 seq2634 86.0 1e-11 seq695 86.0 1e-11 seq27424 84.2 5e-11 >seq19449 Length=4096 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 850 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 909 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || ||||| ||| | || Sbjct 910 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 969 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||||||||| ||||| | || ||||| || ||||| Sbjct 970 ATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAA 1019 >seq10902 Length=7311 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 5807 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 5866 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 5867 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTA 5926 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || || || ||||| ||||| | || |||||||| ||||| Sbjct 5927 ATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAA 5976 >seq8650 Length=8768 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 4515 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 4574 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 4575 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 4634 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 4635 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 4684 >seq7966 Length=9287 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 5328 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 5269 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 5268 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 5209 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 5208 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 5159 >seq16244 Length=5026 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 35 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 94 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 95 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 126 >seq6254 Length=10896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 10815 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 10756 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 10755 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 10724 >seq5142 Length=12213 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 6858 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 6799 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 6798 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 6767 >seq2634 Length=16880 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 1316 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 1257 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 1256 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 1225 >seq695 Length=26773 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 12773 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 12832 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 12833 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 12864 >seq27424 Length=2520 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/172 (72%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 544 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 485 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC--GGACGCTCAAAGAC 206296 ||| || ||| ||||| || || || || || || || ||| ||| | | Sbjct 484 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCCGGGAGCAGCAACGTC 425 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | |||||||| || ||||| ||||| ||||| | || || |||| ||||| Sbjct 424 TCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTATCCGACTACAA 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181346232102061