Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq19412 78.8 3e-11 seq19313 78.8 3e-11 seq12155 78.8 3e-11 seq4754 78.8 3e-11 seq3371 78.8 3e-11 seq2276 78.8 3e-11 seq2032 78.8 3e-11 seq592 78.8 3e-11 seq51 78.8 3e-11 seq47 78.8 3e-11 >seq19412 Length=4105 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 3676 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 3619 >seq19313 Length=4128 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 777 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 720 >seq12155 Length=6688 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 1567 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 1624 >seq4754 Length=12711 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 515 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 458 >seq3371 Length=15103 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 7918 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 7861 >seq2276 Length=17916 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 12090 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 12147 >seq2032 Length=18648 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 5098 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 5155 >seq592 Length=28067 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 14958 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 15015 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 18858 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 18915 >seq51 Length=48489 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 1552 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 1495 >seq47 Length=49657 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 13412 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 13469 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 13553 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844166880945