Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq22378 86.0 6e-12 seq3965 86.0 6e-12 >seq22378 Length=3416 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || || ||| | ||||| | ||||| |||||| Sbjct 1933 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1874 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| |||||| || ||||||||||| || || |||||| Sbjct 1873 GATACTATTGAGAACGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 1814 Query 25295 CA 25296 || Sbjct 1813 CA 1812 >seq3965 Length=13966 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || || ||| | ||||| | ||||| |||||| Sbjct 1673 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1614 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| |||||| || ||||||||||| || || |||||| Sbjct 1613 GATACTATTGAGAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 1554 Query 25295 CA 25296 || Sbjct 1553 CA 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444920028705120