Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3049 125 6e-24 seq13787 111 1e-19 seq2786 111 1e-19 seq27347 109 4e-19 seq27688 105 5e-18 >seq3049 Length=15854 Score = 125 bits (138), Expect = 6e-24 Identities = 279/422 (66%), Gaps = 44/422 (10%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| |||||||||| || ||||||||||| ||||||||||| Sbjct 14197 CGTTTTGCTCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCT 14138 Query 43964 ATAGAAAATATTCATTCGGAAATGTA--CAGTCTTCTGATAGATACGTACATCAAAGAT- 44020 || |||||||||||||| |||||||| || | | || ||||| || || |||||| Sbjct 14137 ATTGAAAATATTCATTCAGAAATGTATTCAAAAT--TAATTGATACTTATATTAAAGATC 14080 Query 44021 ---GGGCACG--------------AGAAGCA-----------------TCGA--TTGTTT 44044 | ||| ||| | || | |||||| Sbjct 14079 CGATTGAACGGTATTTCCTTCTTTAGATTAAAAAATTTTTTTAATAGTTCAAAGTTGTTT 14020 Query 44045 AATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-- 44102 ||||| ||| | | || || | ||||| || ||||| ||| |||| Sbjct 14019 AATGCTATATTCGAGTTTGATTTTATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACT 13960 Query 44103 -TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATT 44161 | | | | | ||| ||||| ||||| ||| | || ||||| | || || || || Sbjct 13959 GCTAGTAAAGAAGCTTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATA 13900 Query 44162 TTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 ||||| || ||| ||||| || || |||||| |||||||||| ||||| |||||||| Sbjct 13899 TTCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGA 13840 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||| ||||| ||||| |||||||||||| | ||| | ||||||||||| Sbjct 13839 CTGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 13780 Query 44282 TT 44283 || Sbjct 13779 TT 13778 >seq13787 Length=5932 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||| Sbjct 1181 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 1122 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 1121 ATTGAAAATATTCATTCAGAAATGTA 1096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||| | || || || || ||||| || ||| Sbjct 922 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAG 863 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| |||| |||||||| |||| || Sbjct 862 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAA 803 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||| ||||| ||| |||||||| | ||| | ||||||||||| Sbjct 802 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTG 758 >seq2786 Length=16508 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||| Sbjct 4597 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 4538 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 4537 ATTGAAAATATTCATTCAGAAATGTA 4512 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||||| || || || || |||||||| ||| Sbjct 4339 TTCATTTGGTGAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAG 4280 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 4279 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 4220 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| ||| |||||||| | ||| | ||||||||||| || Sbjct 4219 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTT 4172 >seq27347 Length=2531 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| ||| | || ||||| | || || || || ||||| || ||| Sbjct 34 TTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 93 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 94 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 153 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||||||| | ||| | ||||||||||| || Sbjct 154 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 201 >seq27688 Length=2484 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||| | || || || || ||||| || ||| Sbjct 209 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 268 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 269 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 328 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||||||| | ||| | ||||||||||| || Sbjct 329 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397304184352705