Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq3049 125 6e-24
seq13787 111 1e-19
seq2786 111 1e-19
seq27347 109 4e-19
seq27688 105 5e-18
>seq3049
Length=15854
Score = 125 bits (138), Expect = 6e-24
Identities = 279/422 (66%), Gaps = 44/422 (10%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|| ||||| |||||||||||| |||||||||| || ||||||||||| |||||||||||
Sbjct 14197 CGTTTTGCTCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCT 14138
Query 43964 ATAGAAAATATTCATTCGGAAATGTA--CAGTCTTCTGATAGATACGTACATCAAAGAT- 44020
|| |||||||||||||| |||||||| || | | || ||||| || || ||||||
Sbjct 14137 ATTGAAAATATTCATTCAGAAATGTATTCAAAAT--TAATTGATACTTATATTAAAGATC 14080
Query 44021 ---GGGCACG--------------AGAAGCA-----------------TCGA--TTGTTT 44044
| ||| ||| | || | ||||||
Sbjct 14079 CGATTGAACGGTATTTCCTTCTTTAGATTAAAAAATTTTTTTAATAGTTCAAAGTTGTTT 14020
Query 44045 AATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-- 44102
||||| ||| | | || || | ||||| || ||||| ||| ||||
Sbjct 14019 AATGCTATATTCGAGTTTGATTTTATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACT 13960
Query 44103 -TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATT 44161
| | | | | ||| ||||| ||||| ||| | || ||||| | || || || ||
Sbjct 13959 GCTAGTAAAGAAGCTTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATA 13900
Query 44162 TTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221
||||| || ||| ||||| || || |||||| |||||||||| ||||| ||||||||
Sbjct 13899 TTCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGA 13840
Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281
|||| ||||| ||||| |||||||||||| | ||| | |||||||||||
Sbjct 13839 CTGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 13780
Query 44282 TT 44283
||
Sbjct 13779 TT 13778
>seq13787
Length=5932
Score = 111 bits (122), Expect = 1e-19
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|| ||||| |||||||||||| ||||||| || || ||||||||||| |||||||||||
Sbjct 1181 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 1122
Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989
|| |||||||||||||| ||||||||
Sbjct 1121 ATTGAAAATATTCATTCAGAAATGTA 1096
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175
||| ||||| ||||| || | || ||||| | || || || || ||||| || |||
Sbjct 922 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAG 863
Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235
||||| || || |||||| |||||||||| |||| |||||||| |||| ||
Sbjct 862 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAA 803
Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280
||| ||||| ||| |||||||| | ||| | |||||||||||
Sbjct 802 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTG 758
>seq2786
Length=16508
Score = 111 bits (122), Expect = 1e-19
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|| ||||| |||||||||||| ||||||| || || ||||||||||| |||||||||||
Sbjct 4597 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 4538
Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989
|| |||||||||||||| ||||||||
Sbjct 4537 ATTGAAAATATTCATTCAGAAATGTA 4512
Score = 109 bits (120), Expect = 4e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175
||| ||||| ||||| || | || ||||||| || || || || |||||||| |||
Sbjct 4339 TTCATTTGGTGAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAG 4280
Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235
||||| || || |||||| |||||||||| ||||| |||||||| |||| ||
Sbjct 4279 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 4220
Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| ||||| ||| |||||||| | ||| | ||||||||||| ||
Sbjct 4219 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTT 4172
>seq27347
Length=2531
Score = 109 bits (120), Expect = 4e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175
||| ||||| ||||| ||| | || ||||| | || || || || ||||| || |||
Sbjct 34 TTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 93
Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235
||||| || || |||||| |||||||||| ||||| |||||||| |||| ||
Sbjct 94 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 153
Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| ||||| |||||||||||| | ||| | ||||||||||| ||
Sbjct 154 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 201
>seq27688
Length=2484
Score = 105 bits (116), Expect = 5e-18
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175
||| ||||| ||||| || | || ||||| | || || || || ||||| || |||
Sbjct 209 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 268
Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235
||||| || || |||||| |||||||||| ||||| |||||||| |||| ||
Sbjct 269 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 328
Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| ||||| |||||||||||| | ||| | ||||||||||| ||
Sbjct 329 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397304184352705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |