Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq2634 87.8 2e-12
seq20812 82.4 6e-11
seq16244 82.4 6e-11
seq6254 82.4 6e-11
seq695 82.4 6e-11
seq490 82.4 6e-11
>seq2634
Length=16880
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
|||||||| ||||| || || | || || ||||| |||||| || | | ||||
Sbjct 1090 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 1149
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | ||||||||||| || || |||| || || |||| ||||||||| |||
Sbjct 1150 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 1209
Query 27240 ATTTGCAT 27247
||||||||
Sbjct 1210 ATTTGCAT 1217
>seq20812
Length=3765
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103
||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| || ||
Sbjct 2210 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCCTG 2269
Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153
|| ||| | ||||||| ||| ||||||||||| || || | |||||
Sbjct 2270 GTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 2319
>seq16244
Length=5026
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
|||||||| ||||| || || | || || ||||| |||||| || | | ||||
Sbjct 261 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 202
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | ||||||||||| || || |||| || || ||| ||||||||| |||
Sbjct 201 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCATTCAAAGTTTTCACGAAG 142
Query 27240 ATTTGCAT 27247
||||||||
Sbjct 141 ATTTGCAT 134
>seq6254
Length=10896
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
|||||||| ||||| || || | || || ||||| |||||| || | | ||||
Sbjct 10589 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 10648
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | ||||||||||| || || |||| || || |||| |||||| || |||
Sbjct 10649 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 10708
Query 27240 ATTTGCAT 27247
||||||||
Sbjct 10709 ATTTGCAT 10716
>seq695
Length=26773
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179
|||||||| ||||| || || | || || ||||| |||||| || | | ||||
Sbjct 12999 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 12940
Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239
| |||||| | ||||||||||| || || |||| || || |||| |||||| || |||
Sbjct 12939 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 12880
Query 27240 ATTTGCAT 27247
||||||||
Sbjct 12879 ATTTGCAT 12872
>seq490
Length=29575
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103
||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| |||||
Sbjct 1888 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCTTG 1947
Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153
| ||| | ||||||| ||| ||||||||||| || || | |||||
Sbjct 1948 ATCGCTGACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 1997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424772088471192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |