Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2634 87.8 2e-12 seq20812 82.4 6e-11 seq16244 82.4 6e-11 seq6254 82.4 6e-11 seq695 82.4 6e-11 seq490 82.4 6e-11 >seq2634 Length=16880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 1090 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 1149 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 1150 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 1209 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 1210 ATTTGCAT 1217 >seq20812 Length=3765 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103 ||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| || || Sbjct 2210 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCCTG 2269 Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 || ||| | ||||||| ||| ||||||||||| || || | ||||| Sbjct 2270 GTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 2319 >seq16244 Length=5026 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 261 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 202 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || ||| ||||||||| ||| Sbjct 201 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCATTCAAAGTTTTCACGAAG 142 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 141 ATTTGCAT 134 >seq6254 Length=10896 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 10589 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 10648 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| |||||| || ||| Sbjct 10649 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 10708 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 10709 ATTTGCAT 10716 >seq695 Length=26773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 12999 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 12940 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| |||||| || ||| Sbjct 12939 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 12880 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 12879 ATTTGCAT 12872 >seq490 Length=29575 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103 ||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| ||||| Sbjct 1888 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCTTG 1947 Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 | ||| | ||||||| ||| ||||||||||| || || | ||||| Sbjct 1948 ATCGCTGACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 1997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424772088471192