Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2550 87.8 2e-12
>seq2550
Length=17099
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
||||||||||||||||| || | ||| || ||| || | || || |||||||| | |
Sbjct 11386 GCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCATTTCAAACATA 11445
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG-AGCA 11748
|| | || | | || || ||||||||||||||||| | || | || | ||| | ||
Sbjct 11446 TCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGAGCCAGAAACA 11505
Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808
| |||||| || ||||| | || || || | ||| |||||| | || || || ||
Sbjct 11506 GT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAGTTTTGCCAGT 11564
Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCC 11835
||||| ||| | |||||| || ||
Sbjct 11565 TCCTGGTGGACCAGTGAGAAGAGCACC 11591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627785960613600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |