Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2550 87.8 2e-12 >seq2550 Length=17099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||||||||| || | ||| || ||| || | || || |||||||| | | Sbjct 11386 GCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCATTTCAAACATA 11445 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG-AGCA 11748 || | || | | || || ||||||||||||||||| | || | || | ||| | || Sbjct 11446 TCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGAGCCAGAAACA 11505 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | |||||| || ||||| | || || || | ||| |||||| | || || || || Sbjct 11506 GT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAGTTTTGCCAGT 11564 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCC 11835 ||||| ||| | |||||| || || Sbjct 11565 TCCTGGTGGACCAGTGAGAAGAGCACC 11591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627785960613600