Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2550 105 8e-18 seq418 104 3e-17 seq26161 93.3 5e-14 seq3841 89.7 6e-13 seq27688 82.4 9e-11 >seq2550 Length=17099 Score = 105 bits (116), Expect = 8e-18 Identities = 156/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 9695 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||||||| ||||||||||||||||| || | ||||| ||| || | || || | Sbjct 11376 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCAT 11435 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||||| | ||||| ||||| || ||| ||||||||||||||||| | || | || Sbjct 11436 TTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 11495 Query 9814 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | | |||| | |||||| || ||||||| || || || | ||| |||||| | || Sbjct 11496 GCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAG 11554 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | || || || ||||| ||| | ||| || ||||| Sbjct 11555 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 11591 >seq418 Length=30592 Score = 104 bits (114), Expect = 3e-17 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTT-TCGCG 9747 |||| ||||| | ||||||||||||||||| || | ||||| || |||||| | || Sbjct 2734 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCG 2792 Query 9748 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 || | |||||| | ||||| ||||| | ||| ||||||||||||||||| | || Sbjct 2793 TGCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAA 2852 Query 9808 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866 | || | | | |||| | |||||| || ||||| | || || ||| | ||| ||| | Sbjct 2853 TTCTGAGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAA 2911 Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | | ||| ||||| || ||||| ||| | || || ||||| Sbjct 2912 GCAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACC 2954 >seq26161 Length=2716 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 9695 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||||||| ||||||||||||||||| || | ||||| ||| || | || || | Sbjct 1423 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 1482 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 ||| || | ||||| ||||| || ||| ||||||||||||||||| | ||| | || Sbjct 1483 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAATTCTGA 1542 Query 9814 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | | |||| | ||| || || ||||| | || || ||| | ||| || || | || Sbjct 1543 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 1601 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 |||| || || ||||| || | ||| || ||||| Sbjct 1602 TCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACC 1638 >seq3841 Length=14205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 169328 GCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCA 169387 ||||| | |||||| | ||| ||||||||||| || ||||| || ||||||||| Sbjct 9948 GCATCTCTAACATTTAAAAGCTTTCCACGAAGAGGAAAAACACCATAAAAATCACGACCG 10007 Query 169388 ACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGC 169447 | || | ||| || || || | ||| || || || || || || || | |||||| Sbjct 10008 ATAACTCCCAAACCAGCAACAGCCAAAGTTTTGGCTGAATCTCCTTCAGTTAGAATGAGC 10067 Query 169448 GTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 |||||||| | ||| | || || || | ||||||||| |||||||||| || ||| Sbjct 10068 GTACATTTACGAGAATTACGAGTTCCAGCTTCGTTCGCATCTTCCAATTTGGCAACACC 10126 >seq27688 Length=2484 Score = 82.4 bits (90), Expect = 9e-11 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCTGAGCG 94808 || ||||| ||||||||| | ||| || || |||| || ||| |||| ||| || Sbjct 165 AAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGC-TTCATTTGGTGAACG 223 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTT 94867 ||| | || ||||| ||||||||||| ||||||||||| || ||| || |||| Sbjct 224 TCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGG-AAGTTTTGCTGCAATTT 282 Query 94868 ATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTC 94927 |||||| ||||| || ||| | ||||| || || || || | || |||| Sbjct 283 TTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTC 342 Query 94928 GTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAAC 94987 |||| || ||||| || | ||| ||||| ||||||| || ||| || ||||| Sbjct 343 GTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTGAATAATAAAC 402 Query 94988 CAA 94990 ||| Sbjct 403 CAA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583032300290840