Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_028104.1
Length=73689
Score E
Sequences producing significant alignments: (Bits) Value
seq11839 82.4 4e-11
seq5022 82.4 4e-11
seq3841 82.4 4e-11
seq373 82.4 4e-11
>seq11839
Length=6852
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 3861 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3802
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
|||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 3801 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3745
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
|||| ||| ||| ||||| |||||||| | |||
Sbjct 3744 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 3703
>seq5022
Length=12357
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 3805 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3864
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
||||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 3865 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3921
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
||| ||| ||| ||||| |||||||| | |||
Sbjct 3922 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 3963
>seq3841
Length=14205
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 8407 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 8466
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
||||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 8467 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 8523
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
||| ||| ||| ||||| |||||||| | |||
Sbjct 8524 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 8565
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 8686 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 8745
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
|||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 8746 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 8802
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
|||| ||| ||| ||||| |||||||| | |||
Sbjct 8803 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 8844
>seq373
Length=31417
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 15701 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 15642
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
|||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 15641 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 15585
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
|||| ||| ||| ||||| |||||||| | |||
Sbjct 15584 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 15543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 235589977678650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |