Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq11839 82.4 4e-11 seq5022 82.4 4e-11 seq3841 82.4 4e-11 seq373 82.4 4e-11 >seq11839 Length=6852 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 3861 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3802 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 |||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 3801 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3745 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 |||| ||| ||| ||||| |||||||| | ||| Sbjct 3744 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 3703 >seq5022 Length=12357 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 3805 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3864 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 3865 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3921 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 ||| ||| ||| ||||| |||||||| | ||| Sbjct 3922 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 3963 >seq3841 Length=14205 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 8407 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 8466 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 8467 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 8523 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 ||| ||| ||| ||||| |||||||| | ||| Sbjct 8524 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 8565 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 8686 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 8745 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 |||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 8746 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 8802 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 |||| ||| ||| ||||| |||||||| | ||| Sbjct 8803 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 8844 >seq373 Length=31417 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 15701 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 15642 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 |||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 15641 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 15585 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 |||| ||| ||| ||||| |||||||| | ||| Sbjct 15584 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 15543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235589977678650