Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq5035 109 4e-19 seq31166 104 2e-17 seq60 104 2e-17 >seq5035 Length=12327 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||||||||| |||| ||||||||| Sbjct 8319 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGTGCATCACCAAGTGTATGAAT 8378 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 8379 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 8438 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 8439 GGCTATATTGAAAGGAACGCCTAAA 8463 >seq31166 Length=2021 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||| ||||| |||| ||||||||| Sbjct 1005 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 946 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 945 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 886 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 885 GGCTATATTGAAAGGAACGCCTAAA 861 >seq60 Length=47019 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||| ||||| |||| ||||||||| Sbjct 12178 TTGTGTTTTTAAAGCCTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 12237 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 12238 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 12297 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 12298 GGCTATATTGAAAGGAACGCCTAAA 12322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408442328307587