Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_029119.1
Length=127726
Score E
Sequences producing significant alignments: (Bits) Value
seq5035 109 4e-19
seq31166 104 2e-17
seq60 104 2e-17
>seq5035
Length=12327
Score = 109 bits (120), Expect = 4e-19
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118
|||||| | || || || | ||| | ||||||||||||||||| |||| |||||||||
Sbjct 8319 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGTGCATCACCAAGTGTATGAAT 8378
Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178
||||||||| | | |||||| | | | || | | ||| || ||||| | ||||||
Sbjct 8379 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 8438
Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203
|| |||||||||||||| ||||||
Sbjct 8439 GGCTATATTGAAAGGAACGCCTAAA 8463
>seq31166
Length=2021
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118
|||||| | || || || | ||| | ||||||||||| ||||| |||| |||||||||
Sbjct 1005 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 946
Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178
||||||||| | | |||||| | | | || | | ||| || ||||| | ||||||
Sbjct 945 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 886
Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203
|| |||||||||||||| ||||||
Sbjct 885 GGCTATATTGAAAGGAACGCCTAAA 861
>seq60
Length=47019
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118
|||||| | || || || | ||| | ||||||||||| ||||| |||| |||||||||
Sbjct 12178 TTGTGTTTTTAAAGCCTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 12237
Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178
||||||||| | | |||||| | | | || | | ||| || ||||| | ||||||
Sbjct 12238 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 12297
Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203
|| |||||||||||||| ||||||
Sbjct 12298 GGCTATATTGAAAGGAACGCCTAAA 12322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408442328307587
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |