Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq15966 98.7 7e-16
seq9420 98.7 7e-16
seq1871 98.7 7e-16
seq22378 84.2 1e-11
seq3965 84.2 1e-11
>seq15966
Length=5121
Score = 98.7 bits (108), Expect = 7e-16
Identities = 105/135 (78%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
||||| ||||||||||| || || || ||||| |||||||| || |||||||| |||||
Sbjct 799 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 858
Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
| | || || |||| ||| |||| | ||||||| || ||||| ||| | |||||
Sbjct 859 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 917
Query 23724 AGATCAACAGCGTTT 23738
||||||||||||||
Sbjct 918 TGATCAACAGCGTTT 932
>seq9420
Length=8200
Score = 98.7 bits (108), Expect = 7e-16
Identities = 105/135 (78%), Gaps = 3/135 (2%)
Strand=Plus/Minus
Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
||||| ||||||||||| || || || ||||| |||||||| || |||||||| |||||
Sbjct 7286 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 7227
Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
| | || || |||| ||| |||| |||||| || || ||||| ||| | |||||
Sbjct 7226 GCTTCTGATACCATTGAGAATGTTAAGGCAAAAA-TTCAAGATAAAGAGGGTATCCCGCC 7168
Query 23724 AGATCAACAGCGTTT 23738
||||||||||||||
Sbjct 7167 TGATCAACAGCGTTT 7153
>seq1871
Length=19151
Score = 98.7 bits (108), Expect = 7e-16
Identities = 105/135 (78%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
||||| ||||||||||| || || || ||||| |||||||| || |||||||| |||||
Sbjct 11462 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 11521
Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
| | || || |||| ||| |||| | ||||||| || ||||| ||| | |||||
Sbjct 11522 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 11580
Query 23724 AGATCAACAGCGTTT 23738
||||||||||||||
Sbjct 11581 TGATCAACAGCGTTT 11595
>seq22378
Length=3416
Score = 84.2 bits (92), Expect = 1e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || || | || ||||| || |||||||| |||||||| ||
Sbjct 2209 AATATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCC 2150
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||||| | || |||||| || || |||||| | ||||| ||
Sbjct 2149 TCTGACACGATTGAAAATGTCAAGGCCAAAATTCAGGATAAGGAAGGTATCCCGCCGGAC 2090
Query 23728 CAACAGCGTTT 23738
|||||||||||
Sbjct 2089 CAACAGCGTTT 2079
>seq3965
Length=13966
Score = 84.2 bits (92), Expect = 1e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || || | || ||||| || |||||||| |||||||| ||
Sbjct 1949 AATATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCC 1890
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||||| | || |||||| || || |||||| | ||||| ||
Sbjct 1889 TCTGACACGATTGAAAATGTCAAGGCCAAAATTCAGGATAAGGAAGGTATCCCGCCGGAC 1830
Query 23728 CAACAGCGTTT 23738
|||||||||||
Sbjct 1829 CAACAGCGTTT 1819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337880491001228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |