Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15966 98.7 7e-16 seq9420 98.7 7e-16 seq1871 98.7 7e-16 seq22378 84.2 1e-11 seq3965 84.2 1e-11 >seq15966 Length=5121 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 799 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 858 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 859 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 917 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 918 TGATCAACAGCGTTT 932 >seq9420 Length=8200 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 7286 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 7227 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| |||||| || || ||||| ||| | ||||| Sbjct 7226 GCTTCTGATACCATTGAGAATGTTAAGGCAAAAA-TTCAAGATAAAGAGGGTATCCCGCC 7168 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 7167 TGATCAACAGCGTTT 7153 >seq1871 Length=19151 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 11462 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 11521 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 11522 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 11580 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 11581 TGATCAACAGCGTTT 11595 >seq22378 Length=3416 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || | || ||||| || |||||||| |||||||| || Sbjct 2209 AATATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCC 2150 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || |||||| || || |||||| | ||||| || Sbjct 2149 TCTGACACGATTGAAAATGTCAAGGCCAAAATTCAGGATAAGGAAGGTATCCCGCCGGAC 2090 Query 23728 CAACAGCGTTT 23738 ||||||||||| Sbjct 2089 CAACAGCGTTT 2079 >seq3965 Length=13966 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || | || ||||| || |||||||| |||||||| || Sbjct 1949 AATATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCC 1890 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || |||||| || || |||||| | ||||| || Sbjct 1889 TCTGACACGATTGAAAATGTCAAGGCCAAAATTCAGGATAAGGAAGGTATCCCGCCGGAC 1830 Query 23728 CAACAGCGTTT 23738 ||||||||||| Sbjct 1829 CAACAGCGTTT 1819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337880491001228