Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq19449 122 2e-22
seq10902 122 2e-22
seq8650 122 2e-22
seq7966 122 2e-22
seq27424 114 3e-20
seq7464 93.3 1e-13
seq567 91.5 4e-13
seq6254 89.7 1e-12
seq2634 89.7 1e-12
seq695 89.7 1e-12
seq22378 87.8 4e-12
seq3965 87.8 4e-12
>seq19449
Length=4096
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | ||||||||| |||||||| || |||||
Sbjct 1020 ATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTG 961
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| |||||||||||
Sbjct 960 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 901
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 900 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 841
>seq10902
Length=7311
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| |||||||| || | ||||| || | || ||||| |||||||| || |||||
Sbjct 5977 ATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGACGTTG 5918
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 5917 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 5858
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 5857 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 5798
>seq8650
Length=8768
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 4685 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 4626
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 4625 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 4566
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 4565 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 4506
Score = 107 bits (118), Expect = 5e-18
Identities = 115/151 (76%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 5065 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 5006
Query 225594 TTGG-TCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652
||| || || || || || ||||| || |||||||| ||| ||| |||||||||||
Sbjct 5005 CTGGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGT 4946
Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683
| || ||||| || || |||||||||||
Sbjct 4945 CCGACTGCTCCACATCCAAGGTGATCGTCTT 4915
>seq7966
Length=9287
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 5158 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 5217
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 5218 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 5277
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 5278 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 5337
>seq27424
Length=2520
Score = 114 bits (126), Expect = 3e-20
Identities = 135/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| |||| || || | ||||| || | |||||||| |||||||| || |||||
Sbjct 372 ATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 431
Query 225594 TTGGTC--GGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651
|| || ||| || || || ||||| || |||||||| ||| ||| ||||||||||
Sbjct 432 CTGCTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTG 491
Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711
|| || ||||| || || ||||||||||| || || | ||||| | || ||||||
Sbjct 492 TCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGC 551
Query 225712 AT 225713
||
Sbjct 552 AT 553
>seq7464
Length=9728
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct 5981 AAGATTTGTCCATCGGTAATTGAAATAACGTTTGTTGGAATATAAGCAGAAACGTCACCA 6040
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571
||||| || || | || ||||| ||||| || ||||| ||
Sbjct 6041 GCTTGGGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 6081
>seq567
Length=28520
Score = 91.5 bits (100), Expect = 4e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
|| || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| ||
Sbjct 6640 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 6581
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708
||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| |
Sbjct 6580 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 6521
Query 225709 TGCATTTT 225716
||||| ||
Sbjct 6520 TGCATATT 6513
>seq6254
Length=10896
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| |||||||| ||||| ||||| ||| || ||||
Sbjct 10589 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 10648
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| || | ||| || || | ||||| ||||| || ||||||||||| | |||
Sbjct 10649 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 10708
Query 225706 ACTTGCATT 225714
| |||||||
Sbjct 10709 ATTTGCATT 10717
>seq2634
Length=16880
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| |||||||| ||||| ||||| ||| || ||||
Sbjct 1090 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 1149
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| || | ||| || || | ||||| ||||| || ||||||||||| | |||
Sbjct 1150 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 1209
Query 225706 ACTTGCATT 225714
| |||||||
Sbjct 1210 ATTTGCATT 1218
>seq695
Length=26773
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| |||||||| ||||| ||||| ||| || ||||
Sbjct 12999 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 12940
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| || | ||| || || | ||||| ||||| || ||||||||||| | |||
Sbjct 12939 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 12880
Query 225706 ACTTGCATT 225714
| |||||||
Sbjct 12879 ATTTGCATT 12871
Score = 84.2 bits (92), Expect = 5e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 225588 TCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT 225647
||| || || || || ||||| |||||||||||||| || ||| ||||||| ||||||
Sbjct 12182 TCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGAT 12123
Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707
||| || || | || || || | |||||||| || || || | ||| |||| ||| |
Sbjct 12122 GGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGAT 12063
Query 225708 TTGCATTTT 225716
||||| ||
Sbjct 12062 CTGCATATT 12054
>seq22378
Length=3416
Score = 87.8 bits (96), Expect = 4e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
|| |||||||| ||||| ||||||||||| || || || || ||| ||| ||| ||
Sbjct 2082 CGCTGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTCAATC 2141
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708
||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| |
Sbjct 2142 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 2201
Query 225709 TGCATTTT 225716
||||| ||
Sbjct 2202 TGCATATT 2209
>seq3965
Length=13966
Score = 87.8 bits (96), Expect = 4e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
|| |||||||| ||||| ||||||||||| || || || || ||| ||| ||| ||
Sbjct 1822 CGCTGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTCAATC 1881
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708
||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| |
Sbjct 1882 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 1941
Query 225709 TGCATTTT 225716
||||| ||
Sbjct 1942 TGCATATT 1949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192052331270654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |