Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19449 122 2e-22 seq10902 122 2e-22 seq8650 122 2e-22 seq7966 122 2e-22 seq27424 114 3e-20 seq7464 93.3 1e-13 seq567 91.5 4e-13 seq6254 89.7 1e-12 seq2634 89.7 1e-12 seq695 89.7 1e-12 seq22378 87.8 4e-12 seq3965 87.8 4e-12 >seq19449 Length=4096 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | ||||||||| |||||||| || ||||| Sbjct 1020 ATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTG 961 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 960 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 901 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 900 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 841 >seq10902 Length=7311 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| |||||||| || | ||||| || | || ||||| |||||||| || ||||| Sbjct 5977 ATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGACGTTG 5918 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 5917 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 5858 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 5857 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 5798 >seq8650 Length=8768 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 4685 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 4626 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 4625 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 4566 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 4565 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 4506 Score = 107 bits (118), Expect = 5e-18 Identities = 115/151 (76%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 5065 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 5006 Query 225594 TTGG-TCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||| || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 5005 CTGGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGT 4946 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 | || ||||| || || ||||||||||| Sbjct 4945 CCGACTGCTCCACATCCAAGGTGATCGTCTT 4915 >seq7966 Length=9287 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 5158 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 5217 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 5218 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 5277 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 5278 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 5337 >seq27424 Length=2520 Score = 114 bits (126), Expect = 3e-20 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| |||| || || | ||||| || | |||||||| |||||||| || ||||| Sbjct 372 ATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 431 Query 225594 TTGGTC--GGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 || || ||| || || || ||||| || |||||||| ||| ||| |||||||||| Sbjct 432 CTGCTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTG 491 Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711 || || ||||| || || ||||||||||| || || | ||||| | || |||||| Sbjct 492 TCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGC 551 Query 225712 AT 225713 || Sbjct 552 AT 553 >seq7464 Length=9728 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 5981 AAGATTTGTCCATCGGTAATTGAAATAACGTTTGTTGGAATATAAGCAGAAACGTCACCA 6040 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 ||||| || || | || ||||| ||||| || ||||| || Sbjct 6041 GCTTGGGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 6081 >seq567 Length=28520 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| || Sbjct 6640 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 6581 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 6580 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 6521 Query 225709 TGCATTTT 225716 ||||| || Sbjct 6520 TGCATATT 6513 >seq6254 Length=10896 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 10589 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 10648 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 10649 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 10708 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 10709 ATTTGCATT 10717 >seq2634 Length=16880 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 1090 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 1149 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 1150 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 1209 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 1210 ATTTGCATT 1218 >seq695 Length=26773 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 12999 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 12940 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 12939 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAG 12880 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 12879 ATTTGCATT 12871 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225588 TCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT 225647 ||| || || || || ||||| |||||||||||||| || ||| ||||||| |||||| Sbjct 12182 TCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGAT 12123 Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707 ||| || || | || || || | |||||||| || || || | ||| |||| ||| | Sbjct 12122 GGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGAT 12063 Query 225708 TTGCATTTT 225716 ||||| || Sbjct 12062 CTGCATATT 12054 >seq22378 Length=3416 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || |||||||| ||||| ||||||||||| || || || || ||| ||| ||| || Sbjct 2082 CGCTGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTCAATC 2141 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 2142 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 2201 Query 225709 TGCATTTT 225716 ||||| || Sbjct 2202 TGCATATT 2209 >seq3965 Length=13966 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || |||||||| ||||| ||||||||||| || || || || ||| ||| ||| || Sbjct 1822 CGCTGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTCAATC 1881 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 1882 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 1941 Query 225709 TGCATTTT 225716 ||||| || Sbjct 1942 TGCATATT 1949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192052331270654