Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5142 93.3 1e-13 seq2634 93.3 1e-13 seq695 93.3 1e-13 seq15966 87.8 4e-12 seq9420 87.8 4e-12 seq1871 87.8 4e-12 seq567 84.2 5e-11 >seq5142 Length=12213 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 7447 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 7506 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 7507 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 7566 Query 152102 CATTTT 152107 ||| || Sbjct 7567 CATATT 7572 >seq2634 Length=16880 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 1907 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 1966 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 1967 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 2026 Query 152102 CATTTT 152107 ||| || Sbjct 2027 CATATT 2032 >seq695 Length=26773 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 12179 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 12120 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 12119 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATCTG 12060 Query 152102 CATTTT 152107 ||| || Sbjct 12059 CATATT 12054 >seq15966 Length=5121 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 927 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 868 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 867 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 808 Query 152102 CATTTT 152107 ||| || Sbjct 807 CATATT 802 >seq9420 Length=8200 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 7158 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 7217 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 7218 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 7277 Query 152102 CATTTT 152107 ||| || Sbjct 7278 CATATT 7283 >seq1871 Length=19151 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 11590 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 11531 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 11530 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 11471 Query 152102 CATTTT 152107 ||| || Sbjct 11470 CATATT 11465 >seq567 Length=28520 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||||||||||| || ||| |||||||| ||||||||||| || ||| | || | | Sbjct 6638 CTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGT 6579 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| || || ||||||||||| || || || || || | ||||| ||||||| ||| Sbjct 6578 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 6519 Query 152102 CATTTT 152107 ||| || Sbjct 6518 CATATT 6513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153357475685811