Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq3049 170 2e-37
seq2786 156 4e-33
seq27347 152 5e-32
seq13787 149 7e-31
seq27688 147 2e-30
seq14353 82.4 8e-11
seq5989 82.4 8e-11
>seq3049
Length=15854
Score = 170 bits (188), Expect = 2e-37
Identities = 327/486 (67%), Gaps = 37/486 (8%)
Strand=Plus/Plus
Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487
|||||||| |||||| ||| |||||||| ||||| ||| | | | ||| ||
Sbjct 13700 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 13759
Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547
|| |||| | || | |||||| |||||||| | ||| || |||||||| | | |||
Sbjct 13760 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 13819
Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607
||||||||| ||| | ||| ||||| || || ||||| || | |||||| ||||||
Sbjct 13820 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 13879
Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667
||||| ||| || ||||| ||||||||||| || ||||| || | ||||||| ||||
Sbjct 13880 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCA 13939
Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA----- 23722
|||| || | | | || | |||| | ||||| ||| || || |
Sbjct 13940 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 13999
Query 23723 -CACACTCAATTGT----TTCAATTGCTTT----TAAGAGAAAAGTTTTTT--------- 23764
|| |||| | | | || || |||| || | |||| ||||||
Sbjct 14000 TCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAG 14059
Query 23765 -----------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACATTTC 23810
|||| | |||| | ||||| |||||||||| | |||||||||
Sbjct 14060 AAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTC 14119
Query 23811 AGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG 23870
||||||||||||||||||||||| ||||| ||||||||||| | |||||| | | |||
Sbjct 14120 TGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTG 14179
Query 23871 AACATC 23876
||| ||
Sbjct 14180 AACTTC 14185
>seq2786
Length=16508
Score = 156 bits (172), Expect = 4e-33
Identities = 327/492 (66%), Gaps = 43/492 (9%)
Strand=Plus/Plus
Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487
|||||||| |||||| ||| |||||||| ||||| ||| | | | ||| ||
Sbjct 4094 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 4153
Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547
|| |||| | || | |||||| |||||||| | ||| || |||||||| | | |||
Sbjct 4154 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 4213
Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607
||||||||| ||| | ||| ||||| || || ||||| || | |||||| ||||||
Sbjct 4214 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 4273
Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667
||||| ||| |||||||| ||||||||||| || ||||| || | |||||| ||||
Sbjct 4274 GCAAAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCA 4333
Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727
|||| || | | | || | |||| | ||||| ||| || || | | |
Sbjct 4334 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 4393
Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAA---AGTTTTTT--- 23764
||| || | | || ||| || |||| | ||| | ||||||
Sbjct 4394 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAAT 4453
Query 23765 -----------------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATA 23804
|||| | |||| | ||||| |||||||||| | |||
Sbjct 4454 CTAAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATA 4513
Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864
|||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || |
Sbjct 4514 CATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGG 4573
Query 23865 CAATTGAACATC 23876
| |||||| ||
Sbjct 4574 TATTTGAACTTC 4585
>seq27347
Length=2531
Score = 152 bits (168), Expect = 5e-32
Identities = 180/244 (74%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487
|||||||| |||||| ||| |||||||| ||||| ||| | | | ||| ||
Sbjct 279 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 220
Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547
|| |||| | || | |||||| |||||||| | ||| || |||||||| | | |||
Sbjct 219 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 160
Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607
||||||||| ||| | ||| ||||| || || ||||| || | |||||| ||||||
Sbjct 159 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 100
Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667
||||| ||| || ||||| ||||||||||| || ||||| || | ||||||| ||||
Sbjct 99 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCA 40
Query 23668 AATG 23671
||||
Sbjct 39 AATG 36
>seq13787
Length=5932
Score = 149 bits (164), Expect = 7e-31
Identities = 325/493 (66%), Gaps = 44/493 (9%)
Strand=Plus/Plus
Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487
|||||||| |||||| ||| |||||||| ||||| ||| | | | ||| ||
Sbjct 677 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 736
Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547
|| |||| || || | || ||| |||||||| | ||| || |||||||| | | |||
Sbjct 737 TTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 796
Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607
||||||||| ||| | ||| ||||| | || ||||| || | |||||| ||||||
Sbjct 797 AATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCA 856
Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667
||||| ||| || ||||| ||||||||||| || ||||| || | |||||| ||||
Sbjct 857 GCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCA 916
Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727
|||| || | | | || | |||| | ||||| ||| || || | | |
Sbjct 917 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 976
Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAAA-GTTTTTTCTTCA 23769
||| || | | || ||| || |||| | |||| |||||| || |
Sbjct 977 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAA 1036
Query 23770 TT--------------------------ATCTGTTATATATGTATCAATTAGTAAACTAT 23803
|| |||| | ||||| |||||||||| | ||
Sbjct 1037 TTTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAAT 1096
Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863
||||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || |
Sbjct 1097 ACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTG 1156
Query 23864 ACAATTGAACATC 23876
| |||||| ||
Sbjct 1157 GTATTTGAACTTC 1169
>seq27688
Length=2484
Score = 147 bits (162), Expect = 2e-30
Identities = 179/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487
|||||||| |||||| ||| |||||||| ||||| ||| | | | ||| ||
Sbjct 454 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 395
Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547
|| |||| | || | |||||| |||||||| | ||| || |||||||| | | |||
Sbjct 394 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 335
Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607
||||||||| ||| | ||| ||||| || || ||||| || | |||||| ||||||
Sbjct 334 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 275
Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667
||||| ||| || ||||| ||||||||||| || ||||| || | |||||| ||||
Sbjct 274 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCA 215
Query 23668 AATG 23671
||||
Sbjct 214 AATG 211
>seq14353
Length=5696
Score = 82.4 bits (90), Expect = 8e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497
|||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| |||||
Sbjct 1326 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 1267
Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTAT 139532
|||| |||| ||||| |||| |||||||| || ||
Sbjct 1266 TGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 1232
>seq5989
Length=11212
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497
|||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| |||||
Sbjct 4626 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 4567
Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTCTTGTATT 139557
|||| |||| |||| |||| |||||||| || || ||| | ||| ||| || |
Sbjct 4566 TGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCTGCCTA 4507
Query 139558 GCTAGTGAACTAATGAAAATATTTA 139582
||| | ||| | | ||||| ||||
Sbjct 4506 GCTTGGGAATTTAACAAAATTTTTA 4482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521283700557400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |