Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3049 170 2e-37 seq2786 156 4e-33 seq27347 152 5e-32 seq13787 149 7e-31 seq27688 147 2e-30 seq14353 82.4 8e-11 seq5989 82.4 8e-11 >seq3049 Length=15854 Score = 170 bits (188), Expect = 2e-37 Identities = 327/486 (67%), Gaps = 37/486 (8%) Strand=Plus/Plus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 13700 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 13759 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 13760 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 13819 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 13820 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 13879 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | ||||||| |||| Sbjct 13880 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCA 13939 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA----- 23722 |||| || | | | || | |||| | ||||| ||| || || | Sbjct 13940 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 13999 Query 23723 -CACACTCAATTGT----TTCAATTGCTTT----TAAGAGAAAAGTTTTTT--------- 23764 || |||| | | | || || |||| || | |||| |||||| Sbjct 14000 TCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAG 14059 Query 23765 -----------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACATTTC 23810 |||| | |||| | ||||| |||||||||| | ||||||||| Sbjct 14060 AAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTC 14119 Query 23811 AGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG 23870 ||||||||||||||||||||||| ||||| ||||||||||| | |||||| | | ||| Sbjct 14120 TGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTG 14179 Query 23871 AACATC 23876 ||| || Sbjct 14180 AACTTC 14185 >seq2786 Length=16508 Score = 156 bits (172), Expect = 4e-33 Identities = 327/492 (66%), Gaps = 43/492 (9%) Strand=Plus/Plus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 4094 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 4153 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 4154 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 4213 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 4214 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 4273 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| |||||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 4274 GCAAAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCA 4333 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727 |||| || | | | || | |||| | ||||| ||| || || | | | Sbjct 4334 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 4393 Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAA---AGTTTTTT--- 23764 ||| || | | || ||| || |||| | ||| | |||||| Sbjct 4394 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAAT 4453 Query 23765 -----------------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATA 23804 |||| | |||| | ||||| |||||||||| | ||| Sbjct 4454 CTAAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATA 4513 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || | Sbjct 4514 CATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGG 4573 Query 23865 CAATTGAACATC 23876 | |||||| || Sbjct 4574 TATTTGAACTTC 4585 >seq27347 Length=2531 Score = 152 bits (168), Expect = 5e-32 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 279 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 220 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 219 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 160 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 159 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 100 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | ||||||| |||| Sbjct 99 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCA 40 Query 23668 AATG 23671 |||| Sbjct 39 AATG 36 >seq13787 Length=5932 Score = 149 bits (164), Expect = 7e-31 Identities = 325/493 (66%), Gaps = 44/493 (9%) Strand=Plus/Plus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 677 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 736 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| || || | || ||| |||||||| | ||| || |||||||| | | ||| Sbjct 737 TTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 796 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| | || ||||| || | |||||| |||||| Sbjct 797 AATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCA 856 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 857 GCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCA 916 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727 |||| || | | | || | |||| | ||||| ||| || || | | | Sbjct 917 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 976 Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAAA-GTTTTTTCTTCA 23769 ||| || | | || ||| || |||| | |||| |||||| || | Sbjct 977 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAA 1036 Query 23770 TT--------------------------ATCTGTTATATATGTATCAATTAGTAAACTAT 23803 || |||| | ||||| |||||||||| | || Sbjct 1037 TTTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAAT 1096 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 ||||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || | Sbjct 1097 ACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTG 1156 Query 23864 ACAATTGAACATC 23876 | |||||| || Sbjct 1157 GTATTTGAACTTC 1169 >seq27688 Length=2484 Score = 147 bits (162), Expect = 2e-30 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 454 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 395 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 394 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 335 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 334 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 275 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 274 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCA 215 Query 23668 AATG 23671 |||| Sbjct 214 AATG 211 >seq14353 Length=5696 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| ||||| Sbjct 1326 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 1267 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTAT 139532 |||| |||| ||||| |||| |||||||| || || Sbjct 1266 TGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 1232 >seq5989 Length=11212 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| ||||| Sbjct 4626 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 4567 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTCTTGTATT 139557 |||| |||| |||| |||| |||||||| || || ||| | ||| ||| || | Sbjct 4566 TGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCTGCCTA 4507 Query 139558 GCTAGTGAACTAATGAAAATATTTA 139582 ||| | ||| | | ||||| |||| Sbjct 4506 GCTTGGGAATTTAACAAAATTTTTA 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521283700557400