Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq5365 86.0 5e-12
seq567 86.0 5e-12
seq5142 82.4 5e-11
>seq5365
Length=11941
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 44098 TTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGAT 44157
|| ||| ||| ||| || | || | ||| |||| |||||||||| ||||||||||||
Sbjct 565 TTCTTAGTTCTCTCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGAT 506
Query 44158 GTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209
|||||| || ||||| ||| | || || |||||||| || |||||||||
Sbjct 505 GTTGTAGTCAGCGAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATC 454
>seq567
Length=28520
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 44098 TTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGAT 44157
|| ||| ||| ||| || | || | ||| |||| |||||||||| ||||||||||||
Sbjct 7611 TTCTTAGTTCTCTCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGAT 7552
Query 44158 GTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209
|||||| || ||||| ||| | || || |||||||| || |||||||||
Sbjct 7551 GTTGTAGTCAGCGAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATC 7500
>seq5142
Length=12213
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 44203 AAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA 44262
||||| ||| || |||||||| | ||| | ||||| || ||| ||||| ||| |
Sbjct 6896 AAAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGAC 6955
Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322
|| | ||||| || | | |||||| || | || || ||||||||||||||||||||
Sbjct 6956 GTTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTT 7015
Query 44323 CACGAAGATTTGCAT 44337
||| ||| | |||||
Sbjct 7016 CACAAAGGTCTGCAT 7030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359852895029397
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |