Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5365 86.0 5e-12 seq567 86.0 5e-12 seq5142 82.4 5e-11 >seq5365 Length=11941 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 44098 TTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGAT 44157 || ||| ||| ||| || | || | ||| |||| |||||||||| |||||||||||| Sbjct 565 TTCTTAGTTCTCTCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGAT 506 Query 44158 GTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 |||||| || ||||| ||| | || || |||||||| || ||||||||| Sbjct 505 GTTGTAGTCAGCGAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATC 454 >seq567 Length=28520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 44098 TTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGAT 44157 || ||| ||| ||| || | || | ||| |||| |||||||||| |||||||||||| Sbjct 7611 TTCTTAGTTCTCTCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGAT 7552 Query 44158 GTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 |||||| || ||||| ||| | || || |||||||| || ||||||||| Sbjct 7551 GTTGTAGTCAGCGAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATC 7500 >seq5142 Length=12213 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44203 AAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA 44262 ||||| ||| || |||||||| | ||| | ||||| || ||| ||||| ||| | Sbjct 6896 AAAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGAC 6955 Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 || | ||||| || | | |||||| || | || || |||||||||||||||||||| Sbjct 6956 GTTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTT 7015 Query 44323 CACGAAGATTTGCAT 44337 ||| ||| | ||||| Sbjct 7016 CACAAAGGTCTGCAT 7030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359852895029397