Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2044 93.3 4e-14 seq2449 89.7 4e-13 >seq2044 Length=4727 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| |||||||||||||| || || || |||||||||||| ||| || | Sbjct 181 CCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTAGCT 122 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| ||||||| | || ||||||| ||| | ||||| || || ||| Sbjct 121 TTCACATTCTCGATTGTGTCCGAGGCTTCAACCTCGAGGGTAATTGTTTTCCCCGTGAGA 62 Query 118719 GTTTTTACAAAAATCTGCATGGCTTA 118744 || || || || || ||||| |||| Sbjct 61 GTCTTCACGAAGATTTGCATTACTTA 36 >seq2449 Length=712056 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || |||||||| || || || ||| |||||||| |||||| Sbjct 481502 GTTGATTCCTTCTGGATATTGTAATCCGACAACGTACGACCATCTTCGAGCTGCTTTCCA 481561 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||||| ||||| ||||| || || |||||||| ||| || || Sbjct 481562 GCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTGAATCTTCGCCTTG 481621 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | |||| || || || | || | || || ||||||||||| Sbjct 481622 ACATTCTCAATTGTGTCGGATGCT-TCTACTTCCAGAGTGATTGTCTTCCCGGTCAGAGT 481680 Query 118721 TTTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 481681 CTTCACGAAAATCTGCAT 481698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433767671377888