Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11488 89.7 6e-13 seq216 87.8 2e-12 seq11832 86.0 7e-12 seq11757 86.0 7e-12 seq2796 86.0 7e-12 seq743 86.0 7e-12 seq1227 84.2 3e-11 seq2753 82.4 9e-11 >seq11488 Length=93274 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| |||| |||| |||||| |||||| |||||| | ||||||| || ||| Sbjct 53611 GAAAAATT--CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATA 53554 Query 60116 CTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||| Sbjct 53553 CTCACCACTATACTACCGAGGAT 53531 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 54075 AAAAATT--CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 54018 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 54017 TCACCACTATACTACCGAGGA 53997 >seq216 Length=40040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 30406 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 30347 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 30346 CACCACTATACTACCGAGGAT 30326 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| ||| || |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 30586 AAAACATTCCCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 30527 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 30526 CACCACTATACTACCGAGGA 30507 >seq11832 Length=58357 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 45653 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 45712 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 45713 CACCACTATACTACCGAGGA 45732 >seq11757 Length=588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 504 AAAACGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 563 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 564 CACCACTATACTACCGAGGA 583 >seq2796 Length=148589 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 3730 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 3789 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 3790 TATACTACCGAGGAT 3804 >seq743 Length=329218 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 54908 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 54966 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 54967 TACTCACCACTATACTACCGAGGA 54990 >seq1227 Length=6972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 2400 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 2341 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 2340 TATACTACCGAGGA 2327 >seq2753 Length=173146 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| || ||| |||||| | ||||||| || | Sbjct 118042 ATGCAAAACTT-CTCC-CGGCCGGGAATTGAGCCCGGGTCTCGCATGTGACAGACGCGGA 117985 Query 60114 TACTCACCACTATACTACCGAGGATTGAA 60142 |||||||||||||||||||||||| |||| Sbjct 117984 TACTCACCACTATACTACCGAGGACTGAA 117956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571732799449920