Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2449 104 2e-17 seq2880 82.4 7e-11 seq2044 82.4 7e-11 >seq2449 Length=712056 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| || || || ||||| | || || ||| | ||| Sbjct 481698 ATGCAGATTTTCGTGAAGACTCTGACCGGGAAGACAATCACTCTGGAAGTAGAAGCATCC 481639 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || |||||||||||| | || || || || Sbjct 481638 GACACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 481579 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| |||| || ||||| || ||| | ||||| | || || ||||| || Sbjct 481578 CAGCGGTTAATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGTACGTTGTCGGATTACAAT 481519 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| ||||||||||| || || Sbjct 481518 ATCCAGAAGGAATCAACTCTTCATCTTGTTCT 481487 >seq2880 Length=552878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||| | || || ||||||||||| || ||||||| | | ||| ||||||||||| Sbjct 482975 GGTTGAACGTTTCTCTCAAGAAGTGCAGGTTCCGGAGGCCCGTTTCTTCTACGGATTTCA 482916 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 | | || ||||||||| | ||||| |||||||| Sbjct 482915 AATTGCAATTGAAAACATCCATTCGGAAATGTA 482883 >seq2044 Length=4727 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || ||||| || ||| |||| |||||| | || Sbjct 42 ATGCAAATCTTCGTGAAGACTCTCACGGGGAAAACAATTACCCTCGAGGTTGAAGCCTCG 101 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || |||||||| || | || || || ||| Sbjct 102 GACACAATCGAGAATGTGAAAGCTAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 161 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || ||||| || Sbjct 162 CAGCGTCTGATCTTCGCCGG 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445700292842880