Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1175 212 2e-50 seq29 91.5 5e-14 >seq1175 Length=7654 Score = 212 bits (234), Expect = 2e-50 Identities = 266/359 (74%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 33310 GCGGACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAA--TGCGGACAC 33367 ||||| | ||| |||||| | ||| ||||| | ||| ||||||| | ||| | | | Sbjct 988 GCGGATTAAACTGCACCGAGTTTCGCGGAGGTAGTTTGCTTTAAGTCACACTGCCGCCGC 1047 Query 33368 GTC-AGCGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATAT 33426 || | | | | | ||||| | |||||| ||||||||| |||| |||| ||| | Sbjct 1048 GTTGACCTGGCTGGC-GAGTTACCGGTAGTATTTTGCCTCATCTTCTATAGGCGAGATGT 1106 Query 33427 AGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCA 33486 | ||| ||||| | ||||| | | ||| |||||| | |||||||||| | |||| Sbjct 1107 ACTCGATGGGTTCGAGCAGCCTGTAGTTGTTAAACCAGGACAACCATTCCAGCATGGCCA 1166 Query 33487 GTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACA 33546 |||| | | ||||| | |||||| || | | || ||||||||||| || ||||| ||| Sbjct 1167 GTTCTAAGAATTCCTTGGTTTTCACAGTGCC-CGGCGATGAATCAGCTCGATCTTGCACA 1225 Query 33547 GGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGG 33606 | || |||||||| |||||||| | || || ||| ||| |||| ||||||||| || | Sbjct 1226 GTCCATTGATCGTCTCGGCCAGAGAGTTTTCATAGGAGTCTCCCCTGCTGCCGACCGAAG 1285 Query 33607 GCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCC 33665 |||||||||| ||||| ||||||| ||| ||||||| ||||||||||||| || |||| Sbjct 1286 GCTCGATGCCCGCCTCGGCCAGCCTCTCGGTGTAGCGGATGCTGACGTATT-AGGCCCC 1343 >seq29 Length=60989 Score = 91.5 bits (100), Expect = 5e-14 Identities = 95/118 (81%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 34520 TGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACTTCCG-GGGAAAAC-TGCTTGGCTT 34577 |||||||||| ||| |||||||||||||| |||||||||| |||||||| || || | | Sbjct 6435 TGCTCGCGTATCAGACGCACTGCGCGCTCCCGGACTTCCGAGGGAAAACTTGATTACCGT 6376 Query 34578 C-TGTTCATGGCTCCATTCTC-TCAGAGTTGGAGCCTCCACAAACT-CGGGGCGGTTC 34632 | | |||||| ||| |||||| | ||| ||||||||||||| | | | ||||||| Sbjct 6375 CTTATTCATGCCTCGATTCTCTTAAGAACGCGAGCCTCCACAAAATCCAGTGCGGTTC 6318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170647954875280