Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2449 100 3e-16 >seq2449 Length=712056 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| |||||| ||||||||||| ||||||||||| | ||||| || || | Sbjct 483293 CAAAAATCAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTCA 483352 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||||| ||||| || | |||||||||||| || ||||| || | Sbjct 483353 CATTCTCGATTGTGTCAGATGCTTCGACTTCGAGCGTGATGGTTTTCCCCGTAAGGGTCT 483412 Query 94992 TCACAAAGATCTGCATGC 95009 | ||||| || ||||||| Sbjct 483413 TTACAAAAATTTGCATGC 483430 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| ||||| |||||||||| | || |||||||||||||| ||||| || Sbjct 481543 ATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCTTCCTT 481602 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | | ||||| | || || || | ||||| Sbjct 481603 GTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCTACTTCCAGAGTGAT 481662 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||| || |||||||| Sbjct 481663 TGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 481698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224718415040