Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq279 194 3e-45 seq1325 188 1e-43 seq2122 178 2e-40 >seq279 Length=38289 Score = 194 bits (214), Expect = 3e-45 Identities = 203/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||||||||||||||| ||||| || ||| Sbjct 15542 GCGAAGCGCCATCGCAAAGTGCTTCGTGACAACATCCAAGGAATCACGAAGCCGGCCATC 15483 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| |||| || | |||| || |||| Sbjct 15482 CGTCGTCTCGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 15423 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 15422 CGTGGAGTGCTGAAGGTGTTCCTCGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 15363 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| |||||| ||||||| ||||||| || | || |||||||| Sbjct 15362 CATGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGTCAAGGA 15303 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| ||||| ||| | ||| Sbjct 15302 CGTACCCTTTACGGTTTCGGAGGATAA 15276 Score = 190 bits (210), Expect = 3e-44 Identities = 203/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||||||||||||||| ||||| || ||| Sbjct 22919 GCGAAGCGCCATCGCAAAGTGCTTCGTGACAACATCCAAGGAATCACGAAGCCGGCCATC 22860 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| |||| || | |||| || |||| Sbjct 22859 CGTCGTCTCGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 22800 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 22799 CGTGGAGTGCTGAAGGTGTTCCTCGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 22740 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 22739 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAAGGA 22680 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| ||| | |||| Sbjct 22679 CGTACCCTCTACGGTTTCGGAGGATAAT 22652 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||||||||||||||| ||||| || ||| Sbjct 4756 GCGAAGCGCCATCGCAAAGTGCTTCGTGACAACATCCAAGGAATCACGAAGCCGGCCATC 4697 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| |||| || | |||| || |||| Sbjct 4696 CGTCGTCTCGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACC 4637 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 4636 CGTGGAGTGCTGAAGGTGTTCCTCGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 4577 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 4576 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 4517 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| | ||| Sbjct 4516 CGTACCCTCTACGGTTTCGGAGGATAA 4490 >seq1325 Length=242353 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||||||||||||||| ||||| || ||| Sbjct 16727 GCGAAGCGCCATCGCAAAGTGCTTCGTGACAACATCCAAGGAATCACGAAGCCGGCCATC 16786 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| |||| || | |||| || |||| Sbjct 16787 CGTCGTCTCGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 16846 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 16847 CGTGGAGTGCTGAAGGTGTTCCTCGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 16906 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 16907 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 16966 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| | ||| Sbjct 16967 CGTACCCTCTACGGTTTCGGAGGATAA 16993 >seq2122 Length=189064 Score = 178 bits (196), Expect = 2e-40 Identities = 202/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||| | | | ||||| || || || ||||| || || ||||| ||||| Sbjct 128836 CGCTAAGCGTCATAGAAAAGTACTTCGCGACAATATTCAAGGTATTACGAAGCCTGCTAT 128777 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| || || | ||||||||||| || ||| | ||||| | |||| || || | Sbjct 128776 TCGTCGCCTAGCAAGACGTGGTGGAGTGAAACGTATTTCTGGCCTCATCTACGAGGAAAC 128717 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | |||||| ||| |||||| | ||||||| || |||| || Sbjct 128716 TCGTGGGGTACTGAAAGTGTTCCTCGAGAACGTTATTCGTGATGCTGTCACCTATTGTGA 128657 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||||||||||||| || | |||||| ||||||| || |||| |||||||| Sbjct 128656 ACATGCTAAACGTAAGACTGTTACGGCTATGGATGTCGTCTACGCGCTGAAGCGTCAAGG 128597 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | ||||| |||||| | ||| || Sbjct 128596 TCGTACACTCTATGGATTTGGAGGATAAACT 128566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064352661752