Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2449 93.3 3e-14 seq1569 91.5 1e-13 seq10703 82.4 5e-11 >seq2449 Length=712056 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||||| || ||||||||||| ||||| ||| | || || | || Sbjct 481495 ATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGACAACGTACGACCATCTTCGAGCTG 481554 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| |||| || |||||||| | || | ||||| |||||| ||| || Sbjct 481555 CTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTGAATCTT 481614 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||||| | || || ||| ||||| | || || || || || || Sbjct 481615 CGCCTTGACATTCTCAATTGTGTCGGATGCTTCTACTTCCAGAGTGATTGTCTTCCCGGT 481674 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| |||||||| Sbjct 481675 CAGAGTCTTCACGAAAATCTGCAT 481698 >seq1569 Length=5773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||| |||||||| ||||||||||||| | ||||| || |||||||| Sbjct 2947 AAGCTCGTTCCCATGGCTGTGATTTCGCTAGATAGCAATTAGGGACAGTGGAAATCTCGT 2888 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||| |||| ||| || |||| |||||| Sbjct 2887 TAATCCATTCAAGCGCATCAATAGTTAGCTGACGA 2853 >seq10703 Length=106990 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 5/73 (7%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGTTAATCCT 25963 |||||||| |||||||||||||||||||||| ||| | || |||||||||||||| Sbjct 41272 TTCCCTTGACTGTGGTTTCGCTAGATAGTAGTTAGAGACAGTGGGAATCTCGTTAATCCA 41213 Query 25964 TTCATGCGCGTCA 25976 |||||||||||| Sbjct 41212 CTCATGCGCGTCA 41200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334898769146984