Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2449 145 2e-29 seq2044 95.1 3e-14 >seq2449 Length=712056 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || || ||||||| || ||| || |||||||| || || | Sbjct 481471 TCCTCCGCGAAGACGGAGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGA 481530 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| || || ||||| | || ||||| || ||||| | ||||||||| ||||| Sbjct 481531 CAACGTACGACCATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGA---TCTGG 481587 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| || ||||| || ||||| || || || || || | ||| | ||| Sbjct 481588 AGGAATTCCTTCCTTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTC 481647 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| || ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 481648 TACTTCCAGAGTGATTGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCATT 481699 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||||| ||||||||| |||||||| || || ||||| || ||||| Sbjct 483662 CCTGCGAAGATCAACCGCTGTTGATCCGGCGGGATTCCCTCCTTGTCCTGAATCTTCGCC 483721 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | || || || |||||||| ||||||||||| || || || Sbjct 483722 TTCACATTCTCAATGGTGTCAGACGCCTCAACTTCGAGGGTGATCGTCTTTCCAGTAAGC 483781 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 || || || || || |||||| || Sbjct 483782 GTTTTAACAAAAATTTGCATTTTG 483805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||| || |||||||| |||||||| || || || | || | ||| Sbjct 483319 GGAATTCCTTCTTTGTCTTGGATTTTGGCTTTCACATTCTCGATTGTGTCAGATGCTTCG 483378 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || ||||| || || ||||| || || || ||||| Sbjct 483379 ACTTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTTACAAAAATTTGCAT 483428 >seq2044 Length=4727 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||||||||| ||| ||||||||| || || || || || || ||| Sbjct 181 CCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTAGCT 122 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | || | ||| || ||||| || || || ||||| || ||| Sbjct 121 TTCACATTCTCGATTGTGTCCGAGGCTTCAACCTCGAGGGTAATTGTTTTCCCCGTGAGA 62 Query 288454 GTCTTGACGAATATCTGCATTA 288475 ||||| ||||| || ||||||| Sbjct 61 GTCTTCACGAAGATTTGCATTA 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179475083683792