Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2449 104 2e-17 >seq2449 Length=712056 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | ||||||||||||||||| || ||||| |||||||| ||||| ||||| | Sbjct 483289 CCTGCAAAAATCAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCT 483348 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | ||||| || | ||||||||||| || | ||||| || || || Sbjct 483349 TTCACATTCTCGATTGTGTCAGATGCTTCGACTTCGAGCGTGATGGTTTTCCCCGTAAGG 483408 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || ||||||||||||||||| Sbjct 483409 GTCTTTACAAAAATTTGCAT 483428 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||||||||| || | | || ||||| || ||||||||||| |||||||| ||||| Sbjct 481470 TTCCTCCGCGAAGACGGAGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCG 481529 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | ||| || | || ||||| || | || || || || || || || | Sbjct 481530 ACAACGTACGACCATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAG 481589 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| || || ||||| || |||| || | |||||||| | || | Sbjct 481590 GAATTCCTTCCTTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCTA 481649 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| ||||| | || || ||||| ||||| || || ||||| ||||| Sbjct 481650 CTTCCAGAGTGATTGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 481698 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | ||||| || || || |||||||| || || || || || ||||| || Sbjct 483662 CCTGCGAAGATCAACCGCTGTTGATCCGGCGGGATTCCCTCCTTGTCCTGAATCTTCGCC 483721 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | |||||| || | ||| |||||||| || | ||| || || || || Sbjct 483722 TTCACATTCTCAATGGTGTCAGACGCCTCAACTTCGAGGGTGATCGTCTTTCCAGTAAGC 483781 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| Sbjct 483782 GTTTTAACAAAAATTTGCAT 483801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451936167925440