Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2449 129 2e-24 seq1274 129 2e-24 seq11814 125 3e-23 seq10510 102 3e-16 >seq2449 Length=712056 Score = 129 bits (142), Expect = 2e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || ||||| || || || || ||||| || || ||| |||| Sbjct 481699 AATGCAGATTTTCGTGAAGACTCTGACCGGGAAGACAATCACTCTGGAAGTAGAAGCATC 481640 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || || ||||| || ||||||||||||||||| ||||| Sbjct 481639 CGACACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCA 481580 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| || ||||| || | || || || || |||||||| | || ||| ||||||| || Sbjct 481579 ACAGCGGTTAATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGTACGTTGTCGGATTACAA 481520 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| |||| ||||| Sbjct 481519 TATCCAGAAGGAATCAACTCTTCA 481496 >seq1274 Length=282356 Score = 129 bits (142), Expect = 2e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| || || || ||||| | |||||| | || || ||||| |||| || ||| Sbjct 176312 TTTGCACCGGAGGAGATTTCTGCAATGGTTTTGACAAAGATGAAGGAAATTGCCGAATCG 176253 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || |||| ||| | ||||||| | || ||||| || |||||||| |||||| Sbjct 176252 TACCTTGGCAAAGAAGTAAAAAATGCAGTCGTCACCGTTCCTGCATATTTCAACGATGCA 176193 Query 451358 CAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416 ||||| ||||| ||||| ||||| || ||| |||||||| || || ||| | || ||||| Sbjct 176192 CAACGACAAGCGACTAAGGATGCCGGTACA-ATTGCTGGATTGAACGTTGTACGGATTAT 176134 Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||| ||||| || |||||||| | || |||||| ||| Sbjct 176133 TAACGAACCAACTGCAGCTGCAATTGCTTATGGATTAG 176096 >seq11814 Length=373676 Score = 125 bits (138), Expect = 3e-23 Identities = 197/281 (70%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || ||| | || || || || || ||||| ||||| || || ||||| ||||| ||||| Sbjct 237443 GCTGTAGTCACCGTGCCTGCCTACTTCAACGATGCCCAGCGTCAAGCTACTAAGGATGCG 237502 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| |||||||| ||||| ||| ||||||| || |||||||| ||||||||||| | Sbjct 237503 GGAACCATTGCTGGATTAAACGTTGTTCGAATCATCAATGAACCAACAGCAGCTGCCATC 237562 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 ||||| || || | || || || || ||| ||||| | ||||| ||| || Sbjct 237563 GCATACGGTCTTGACAA---GAAGGA---AGGTGAACGTAATATCCTCGTATTCGATCTT 237616 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || || || || |||| || | ||| | || || | || || || ||||| | Sbjct 237617 GGAGGTGGTACCTTTGATGTCTCCATGCTTACCATCGATAACGGTGTGTTCGAAGTGTTG 237676 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || || || || || ||||| || ||||| ||||| |||| Sbjct 237677 GCCACTAACGGAGACACTCACCTTGGAGGAGAAGACTTTGA 237717 >seq10510 Length=112052 Score = 102 bits (112), Expect = 3e-16 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || || |||||||| || |||||||| || | || || ||||| || || ||| Sbjct 23002 GATGCCGTGATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGAT 22943 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| || | || || |||||||||||||||||||| || || || || || ||| Sbjct 22942 GCAGGAGCAATCTCAGGATTGAATGTTCTTCGAATTATTAACGAGCCCACTGCTGCCGCT 22883 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | || || | || | ||| ||| | | | || ||| Sbjct 22882 ATCGCCTACGGTCTCGACAA---GAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGAT 22826 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 |||| || ||||| ||| || | || | || || || || | || ||||| Sbjct 22825 CTTGGAGGTGGAACCTTCGATGTGTCCATTCTAACCATCGAGGACGGAATCTTCGAAGTG 22766 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || | ||| ||||| || ||||| ||||| |||||| | ||||| Sbjct 22765 AAATCCACCGCCGGTGACACCCATCTTGGAGGAGAAGATTTCGATAA 22719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975418075985312