Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq10510 237 1e-56 seq1274 143 2e-28 seq11814 93.3 3e-13 >seq10510 Length=112052 Score = 237 bits (262), Expect = 1e-56 Identities = 635/958 (66%), Gaps = 12/958 (1%) Strand=Plus/Plus Query 517356 TTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAA 517415 |||| ||| || ||||| || || | | || || |||||||| | ||||||| | Sbjct 22051 TTCCGAGAAGGTTGTTATCCTTTGTCATTGCACGCTCTCCCTCGAAGACTTGGATAAGGA 22110 Query 517416 CTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTT 517474 | ||| ||||||||| || || || || ||| |||| | | || ||||| || Sbjct 22111 CACCAGGTTGATTATCGGAGTAGGTGGTGAATG-TCTGACTGGTCTTGGTGGGAATGGTG 22169 Query 517475 GTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGA 517534 ||||| || | || | | ||||| | ||||| |||||||| | |||||| || ||| Sbjct 22170 GTGTTCCTCTTGATCAGAGCCGTCATTACGCCACCAGCTGTTTCGATACCAAGTGACAGA 22229 Query 517535 GGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATA 517594 |||| ||||| | || | || || || | ||| | | |||| ||| || Sbjct 22230 GGAGCAACATCGAGAAGTAGAAGATCCTGCACCGCTTCGGACTTGTCACCAGAAAGGATG 22289 Query 517595 GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGT 517654 || ||||| | ||||||||||||||| || || ||||||||||||| | || ||| ||| Sbjct 22290 GCCGCTTGGACAGCAGCACCATATGCCACTGCCTCATCAGGATTAATGGATTTATTCAGT 22349 Query 517655 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCC 517713 | || ||| ||| | || || ||||||| ||| || || || ||||| | || || Sbjct 22350 TCCTTTCCAGAGAACAGATCAGACAGAAGTT-TCTGGACTTTGGGGATACGGGTGGAACC 22408 Query 517714 TCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTT 517773 ||| || | || || || || | ||| || |||| || | || | | || Sbjct 22409 TCCCACAAGAACGATATCGTGGATCTGGCTCTTGTCCATCTTGGCGTCTCTCAGAGACTT 22468 Query 517774 TTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCT 517833 |||||| || || | | | || || || | || || |||||||| || | Sbjct 22469 TTCAACAGGATCCATGGTGGAGCGGAATAAATCAGCGCACAGCTCTTCGAAGCGGGCACG 22528 Query 517834 AGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTT 517892 ||||| || | || || || || || ||||||| || |||| |||||| | || || Sbjct 22529 AGTAA-TGTTAGTATAGAAGTCGATACCCTCGAACAGTGAGTCAATTTCAATAGAAGCTT 22587 Query 517893 GAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 517952 ||| |||||| || || | ||| || |||||||| || || || | || | || || | Sbjct 22588 GAGACGAAGATGAGAGAGTACGCTTGGCACGTTCGCAAGCGGTGCGGAGACGACGCAAAG 22647 Query 517953 C-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 518011 | | | | | ||| | ||| | || | || | |||||| || | || | || Sbjct 22648 CACGAGGGTTAGT-ATTGAGGTCTTTCTTGTGCTTGCGCTTGAACTCGGCTACGAA--AT 22704 Query 518012 G--TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 518069 | | || | ||| ||||| |||||||| ||||| | | || | || | || | | Sbjct 22705 GGTTAACCATACGGTTATCGAAATCTTCTCCTCCAAGATGGGTGTCACCGGCGGTGGATT 22764 Query 518070 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 | |||| ||| | ||| || || | | | || | ||||| ||||||||| || | Sbjct 22765 TCACTTCGAAGATTCCGTCCTCGATGGTTAGAATGGACACATCGAAGGTTCCACCTCCAA 22824 Query 518130 TATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAG 518189 ||| || || || || || ||| | || || || ||||| || || | || Sbjct 22825 GATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGACCGTAGGCGATAG 22884 Query 518190 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 518249 | |||||||| || || |||||||||| | |||||| | || | ||| |||||||| Sbjct 22885 CGGCAGCAGTGGGCTCGTTAATAATTCGAAGAACATTCAATCCTGAGATTGCTCCTGCAT 22944 Query 518250 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 | || |||||||| | || || ||||| ||||| ||||||||||| || |||||||| Sbjct 22945 CCTTGGTGGCTTGACGCTGCGAGTCGTTGAAATAGGCAGGAACAGTGATCACGGCATC 23002 >seq1274 Length=282356 Score = 143 bits (158), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| |||| ||||| ||||||||||| |||||||| | | ||| Sbjct 176089 TTCTTATCTAATCCATAAGCAATTGCAGCTGCAGTTGGTTCGTTAATAATCCGTACAACG 176148 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | ||||||||| | || ||||| ||||| ||||||| ||||| |||||| |||||| Sbjct 176149 TTCAATCCAGCAATTGTACCGGCATCCTTAGTCGCTTGTCGTTGTGCATCGTTGAAATAT 176208 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 |||||||| || | || |||| |||||||||| |||| || || || || ||| Sbjct 176209 GCAGGAACGGTGACGACTGCATTTTTTACTTCTTTGCCAAGGTA--CGATTCGGCAATTT 176266 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTT 518394 ||||| || | |||| ||||| ||||| | || || | | |||| || Sbjct 176267 CCTTCATCTTTGTCAAAACCATTGCAGAAATCTCCTCCGGTGCAAATTGTTT 176318 >seq11814 Length=373676 Score = 93.3 bits (102), Expect = 3e-13 Identities = 168/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| ||||| || | ||| || | || | ||| ||| ||| || Sbjct 237636 ACATCAAAGGTACCACCTCCAAGATCGAATACGAGGATATTACGTTCAC---CTTCCTTC 237580 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||||||| || || | ||||| || ||||||||||| || |||| | ||| || Sbjct 237579 TTGTCAAGACCGTATGCGATGGCAGCTGCTGTTGGTTCATTGATGATTCGAACAACGTTT 237520 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | |||||||| |||| ||||| ||||| ||||| | || | |||||| || || ||| Sbjct 237519 AATCCAGCAATGGTTCCCGCATCCTTAGTAGCTTGACGCTGGGCATCGTTGAAGTAGGCA 237460 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || || || | || || | | ||||| || |||| || | ||| ||| |||| Sbjct 237459 GGCACGGTGACTACAGCGTGCTTCACTTCCTTTCCAAGGTAGGACTCTGCGATTTCTTTC 237400 Query 518348 ATTTT 518352 || || Sbjct 237399 ATCTT 237395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780233669239984