Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10510 280 2e-70 seq11814 158 2e-33 seq1274 147 3e-30 >seq10510 Length=112052 Score = 280 bits (310), Expect = 2e-70 Identities = 575/852 (67%), Gaps = 2/852 (0%) Strand=Plus/Plus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | ||||| || || || ||| || | | ||||| | ||||| |||| Sbjct 22153 TCTTGGTGGGAATGGTGGTGTTCCTCTTGATCAGAGCCGTCATTACGCCACCAGCTGTTT 22212 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 ||| ||||| |||||||| | || || | |||| || || || || | |||| | Sbjct 22213 CGATACCAAGTGACAGAGGAGCAACATCGAGAAGTAGAAGATCCTGCACCGCTTCGGACT 22272 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 ||||| | | |||||| |||||||| | || || ||||| || |||||||| || | Sbjct 22273 TGTCACCAGAAAGGATGGCCGCTTGGACAGCAGCACCATATGCCACTGCCTCATCAGGAT 22332 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 |||| | |||||||||||| || || || ||| || | | || || | ||| | Sbjct 22333 TAATGGATTTATTCAGTTCCTTTCCAGAGAACAGATCAGACAGAAGTTTCTGGACTTTGG 22392 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGAT-TTATCGATCTTT 7186 |||| || || || || || || | |||||| || | | | | | | || || ||||| Sbjct 22393 GGATACGGGTGGAACCTCCCACAAGAACGATATCGTGGA-TCTGGCTCTTGTCCATCTTG 22451 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 | ||||| || | ||||| ||||| ||||| ||||| || || ||||| Sbjct 22452 GCGTCTCTCAGAGACTTTTCAACAGGATCCATGGTGGAGCGGAATAAATCAGCGCACAGC 22511 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || || || ||||| |||||| |||||||| || | || ||| | | || ||| Sbjct 22512 TCTTCGAAGCGGGCACGAGTAATGTTAGTATAGAAGTCGATACCCTCGAACAGTGAGTCA 22571 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 |||||||| | | ||| | || || || | || ||||| || || || || || || Sbjct 22572 ATTTCAATAGAAGCTTGAGACGAAGATGAGAGAGTACGCTTGGCACGTTCGCAAGCGGTG 22631 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | |||||| | ||||| |||||| | |||||||| || || || || ||| Sbjct 22632 CGGAGACGACGCAAAGCACGAGGGTTAGTATTGAGGTCTTTCTTGTGCTTGCGCTTGAAC 22691 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | ||| || || | | |||||||||||| || || | || || || Sbjct 22692 TCGGCTACGAAATGGTTAACCATACGGTTATCGAAATCTTCTCCTCCAAGATGGGTGTCA 22751 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| | ||| ||||| ||||| || | || ||| ||| | || ||||| || Sbjct 22752 CCGGCGGTGGATTTCACTTCGAAGATTCCGTCCTCGATGGTTAGAATGGACACATCGAAG 22811 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGA 7606 || ||||| || || || || ||||| ||||| || || ||||| |||||| Sbjct 22812 GTTCCACCTCCAAGATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGA 22871 Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 ||||| |||||||| || || || || || |||||||| |||||| |||| || | Sbjct 22872 CCGTAGGCGATAGCGGCAGCAGTGGGCTCGTTAATAATTCGAAGAACATTCAATCCTGAG 22931 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || | | | ||||| || || ||||| || ||||| ||||| || ||||| || || || Sbjct 22932 ATTGCTCCTGCATCCTTGGTGGCTTGACGCTGCGAGTCGTTGAAATAGGCAGGAACAGTG 22991 Query 7727 ACGACCGCGTCC 7738 | || || ||| Sbjct 22992 ATCACGGCATCC 23003 >seq11814 Length=373676 Score = 158 bits (174), Expect = 2e-33 Identities = 205/282 (73%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 ||||| || | ||| || ||| | | || || |||||||| |||||||| || || Sbjct 237672 ACTTCGAACACACCGTTATCGATGGTAAGCATGGAGACATCAAAGGTACCACCTCCAAGA 237613 Query 7562 TCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 || || | ||| | || ||| || ||| ||||| || |||||||| ||||| || Sbjct 237612 TCGAATACGAGGATATTACGT----TCACCTTCCTTCTTGTCAAGACCGTATGCGATGGC 237557 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || ||||||||||| || || |||| | ||| | |||||||| ||| ||||||| Sbjct 237556 AGCTGCTGTTGGTTCATTGATGATTCGAACAACGTTTAATCCAGCAATGGTTCCCGCATC 237497 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || ||||| || || | |||||| |||||||| || || || || || |||| | | Sbjct 237496 CTTAGTAGCTTGACGCTGGGCATCGTTGAAGTAGGCAGGCACGGTGACTACAGCGTGCTT 237437 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 |||| ||| || || || || || ||||| |||||||| || Sbjct 237436 CACTTCCTTTCCAAGGTAGGACTCTGCGATTTCTTTCATCTT 237395 >seq1274 Length=282356 Score = 147 bits (162), Expect = 3e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| | || || || || || || || |||||||| |||||||| || | | | Sbjct 176089 TTCTTATCTAATCCATAAGCAATTGCAGCTGCAGTTGGTTCGTTAATAATCCGTACAACG 176148 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| |||||||| || | ||||| || |||||||||||||| | |||||| || || Sbjct 176149 TTCAATCCAGCAATTGTACCGGCATCCTTAGTCGCTTGTCGTTGTGCATCGTTGAAATAT 176208 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || ||||| || | | |||| || || || |||||||| || || || Sbjct 176209 GCAGGAACGGTGACGACTGCATTTTTTACTTCTTTGCCAAGGTACGATTCGGCAATTTCC 176268 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 ||||| || || | |||||| | |||||||| || | ||||| |||||| Sbjct 176269 TTCATCTTTGTCAAAACCATTGCAGAAATCTCCTCCGGTGCAAATTGTTTC 176319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635038609805760