Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10510 141 7e-28 seq11814 104 2e-16 seq2449 104 2e-16 seq2797 96.9 3e-14 seq1274 93.3 3e-13 >seq10510 Length=112052 Score = 141 bits (156), Expect = 7e-28 Identities = 432/658 (66%), Gaps = 10/658 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | |||||||| | || ||||||||| | ||||| || |||| |||||| || Sbjct 22648 GCTTTGCGTCGTCTCCGCACCGCTTGCGAACGTGCCAAGCGTACTCTCTCATCTTCGTCT 22589 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||| | |||||||| | || ||| | || ||||| || || | |||| ||| | Sbjct 22588 CAAGCTTCTATTGAAATTGACTCACTGTTCGAGGGTATCGACTTCTATACTAACATTACT 22529 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | ||| || ||||| | || ||||| | || | || || || || || ||| Sbjct 22528 CGTGCCCGCTTCGAAGAGCTGTGCGCTGATTTATTCCGCTCCACCATGGATCCTGTTGAA 22469 Query 552075 CAAGTTT-TAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTG 552132 |||| | | ||||| | ||||| || || | ||| | | || || || || ||||| | Sbjct 22468 -AAGTCTCTGAGAGACGCCAAGATGGACAAGAGCCAGA-TCCACGATATCGTTCTTGTGG 22411 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT---TTCAATGGTA 552189 | || || || | || || ||| | | |||| || || || || ||| ||| | Sbjct 22410 GAGGTTCCACCCGTATCCCCAAAGTCCA-GAAAC-TTCTGT-CTGATCTGTTCTCTGGAA 22354 Query 552190 AAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | || | ||| || ||||||| |||||||| || || |||||||| || | |||| Sbjct 22353 AGGAACTGAATAAATCCATTAATCCTGATGAGGCAGTGGCATATGGTGCTGCTGTCCAAG 22294 Query 552250 CAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTA 552309 | || || |||||||| | | ||| | || || || ||||| | |||||| Sbjct 22293 CGGCCATCCTTTCTGGTGACAAGTCCGAAGCGGTGCAGGATCTTCTACTTCTCGATGTTG 22234 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 ||||||| || |||||| | ||||||| ||| || | ||||| ||| ||| | || | Sbjct 22233 CTCCTCTGTCACTTGGTATCGAAACAGCTGGTGGCGTAATGACGGCTCTGATCAAGAGGA 22174 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || || ||||| || | || ||| | || || || ||||||||| ||| Sbjct 22173 ACACCACCATTCCCACCAAGACCAGTCAGACATTCACCACCTACTCCGATAATCAACCTG 22114 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 ||| || ||| | || || ||||| | | | || || ||||| || | || | Sbjct 22113 GTGTCCTTATCCAAGTCTTCGAGGGAGAGCGTGCAATGACAAAGGATAACAACCTTCTCG 22054 Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 | | || | || || ||||| || || ||||||||||| || || || || || Sbjct 22053 GAAAGTTCGAGTTGTCCGGAATTCCGCCGGCCCCTCGTGGAGTTCCACAGATCGAGGT 21996 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || ||||| || || ||||| || ||||| || |||||||| || || || Sbjct 23003 GGATGCCGTGATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGA 22944 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| || | ||| | ||||||||||| ||||| || || || |||||||| || Sbjct 22943 TGCAGGAGCAATCTCAGGATTGAATGTTCTTCGAATTATTAACGAGCCCACTGCTGCCGC 22884 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575 | || || || || || || | | ||| | || || |||||||| ||| Sbjct 22883 TATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCT 22824 Query 550576 TGGAGGT 550582 ||||||| Sbjct 22823 TGGAGGT 22817 >seq11814 Length=373676 Score = 104 bits (114), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| | ||||| | | | || ||| | || || || || || || || || | || | Sbjct 237423 TTGGAAAGGAAGTGAAGCACGCTGTAGTCACCGTGCCTGCCTACTTCAACGATGCCCAGC 237482 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 ||||||||||||| ||||| ||| ||||||||| | || ||| |||| || ||||||| Sbjct 237483 GTCAAGCTACTAAGGATGCGGGAACCATTGCTGGATTAAACGTTGTTCGAATCATCAATG 237542 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559 |||| || || ||||| | ||||| || ||||| | | || || |||| |||| Sbjct 237543 AACCAACAGCAGCTGCCATCGCATACGGTCTTGACA---AGAAGGAAGGTGAACGTAATA 237599 Query 550560 TACTCATCTTTGATTGTGGAGGT 550582 | ||| | || ||| ||||||| Sbjct 237600 TCCTCGTATTCGATCTTGGAGGT 237622 >seq2449 Length=712056 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || ||||||||||| | | || | Sbjct 481481 AGACGGAGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGACAACGTACGA 481540 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || ||||| ||||| || | | || ||||| |||||||||||||| Sbjct 481541 CCATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCTTCC 481600 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || || ||||| || || || ||||||||| || | || ||| ||| ||||| Sbjct 481601 TTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCTAC-TTCCAGAGT 481659 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || ||||| || |||||||| ||||| Sbjct 481660 GATTGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 481698 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | || |||||| || ||||||||||||||||| ||||| ||||| | Sbjct 483289 CCTGCAAAAATCAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCT 483348 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| ||||| |||| || || |||||| || | ||||| || ||||| Sbjct 483349 TTCACATTCTCGATTGTGTCAGATGCTTCGAC-TTCGAGCGTGATGGTTTTCCCCGTAAG 483407 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || || || ||||||||||| Sbjct 483408 GGTCTTTACAAAAATTTGCAT 483428 >seq2797 Length=156036 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 || || ||||||||||||||||| || || ||||| |||| ||||| ||||| |||||| Sbjct 45813 GTGTTCGATTGCTGGTTTGAATCGGGATCCATGCCATATGCTCAAAATCATTACCCATTT 45754 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || ||| ||| ||||| | |||| ||| |||||| ||| | | || | Sbjct 45753 GAGAACAAGAAAATCTTTG---AGGATA---ATTTCCCGGCTGACTTTATTGCGGAGGGA 45700 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 ||||||||||| | || ||||| |||||| | | || | || || || ||||| || Sbjct 45699 ATTGATCAAACCAGAGGATGGTTCTATACCTTGCTTGTGCTTTCAACGGCACTTTTCAAT 45640 Query 368974 AAACC 368978 ||||| Sbjct 45639 AAACC 45635 >seq1274 Length=282356 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| | || ||| || |||||||||||||| || | ||| || | ||| || Sbjct 176101 CCATAAGCAATTGCAGCTGCAGTTGGTTCGTTAATAATCCGTACAACGTTCAATCCAGCA 176160 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 ||| | ||||| ||| ||||| ||||||||||| || |||||||||||||| || Sbjct 176161 ATTGTACCGGCATCCTTAGTCGCTTGTCGTTGTGCATCGTTGAAATATGCAGGAACGGTG 176220 Query 361826 ATCACTGCTTTTTCAACTT 361844 | ||||| |||| |||| Sbjct 176221 ACGACTGCATTTTTTACTT 176239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028668578173360