Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2449 131 1e-25 seq761 89.7 4e-13 >seq2449 Length=712056 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 |||||||| | | ||| | ||| | |||||| || ||||| || || ||||||||||| Sbjct 481469 TTTCCTCCGCGAAGACGGAGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCC 481528 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | |||| || | ||||| || ||||| || || ||||||||||| || Sbjct 481529 GACAACGTACGACCATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGA 481588 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| ||||| || || ||||| || || ||| | || | ||||| || | ||| Sbjct 481589 GGAATTCCTTCCTTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCT 481648 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||||| || || ||||| | ||| || || || |||||||| Sbjct 481649 ACTTCCAGAGTGATTGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 481698 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| || ||||| ||||||||||| ||||| || || || || || ||||| || Sbjct 483660 TACCTGCGAAGATCAACCGCTGTTGATCCGGCGGGATTCCCTCCTTGTCCTGAATCTTCG 483719 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| | || | |||||||||| || ||||| || |||| ||| || || || | Sbjct 483720 CCTTCACATTCTCAATGGTGTCAGACGCCTCAACTTCGAGGGTGATCGTCTTTCCAGTAA 483779 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| || ||||| Sbjct 483780 GCGTTTTAACAAAAATTTGCAT 483801 >seq761 Length=21755 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 84569 TTCCCAA-ATCACCAACATGTCGTATGGGCGAGTCAGGTCCCCCGTGATCCATATTGGTG 84627 ||||||| ||| || |||||||| || | | ||||| ||||| ||||||||||| Sbjct 18912 TTCCCAAGATCGCCCACATGTCGAATAGCGTCGGTTGGTCCACCGTGCACCATATTGGTG 18971 Query 84628 GGATTAAAGTGTTCGCCTGCAGATGTACAACCGTTACTGATGTCGCCAAATTCGTGTACA 84687 ||||||||||| |||| |||| | ||| ||||||| || || ||| ||||| ||| Sbjct 18972 GGATTAAAGTGAGCGCCAGCAGCTAAACATCCGTTACCGAGATCTCCACTCTCGTGAACA 19031 Query 84688 TGCATGCCGTG 84698 || ||||||| Sbjct 19032 TGTGTGCCGTG 19042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396221101115448