Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2449 131 1e-24 seq11814 118 7e-21 seq2044 89.7 3e-12 >seq2449 Length=712056 Score = 131 bits (144), Expect = 1e-24 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||||||||| || ||| || | ||| ||||| | | || Sbjct 481478 CGAAGACGGAGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGACAACGTA 481537 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || |||||||||||||| || | || |||||||| |||||||||||| Sbjct 481538 CGACCATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCT 481597 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| |||||||| |||||| ||||| || || | || | | ||| || Sbjct 481598 TCCTTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCTA-CTTCCAG 481656 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| |||||||| |||||||| || Sbjct 481657 AGTGATTGTCTTCCCGGTCAGAGTCTTCACGAAAATCTG 481695 >seq11814 Length=373676 Score = 118 bits (130), Expect = 7e-21 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 || |||||| ||| ||| ||| || || |||||| | ||||| | | || ||| | || Sbjct 237395 AAGATGAAAGAAATCGCAGAG-TCCTACCTTGGAAAGGAAGTGAAGCACGCTGTAGTCAC 237453 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || || || || ||| | || |||||||| ||||| |||||||||| ||||| Sbjct 237454 CGTGCCTGCCTACTTCAACGATGCCCAGCGTCAAGCTACTAAGGATGCGGGAACCATTGC 237513 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || | || ||| | || || || ||||||||||||||||| || | || || ||||| Sbjct 237514 TGGATTAAACGTTGTTCGAATCATCAATGAACCAACAGCAGCTGCCATCGCATACGGTCT 237573 Query 474868 TGATAAGAA 474876 ||| ||||| Sbjct 237574 TGACAAGAA 237582 >seq2044 Length=4727 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || || ||||| || ||||| || || ||||| ||||||||||||||||| | Sbjct 181 CCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTAGCT 122 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || || || | | | | || |||||||| ||||| || |||||| Sbjct 121 TTCACATTCTCGATTGTGTCCGAGGCTTCAACCTCGAGGGTAATTGTTTTCCCCGTGAGA 62 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| ||||| ||||| Sbjct 61 GTCTTCACGAAGATTTG 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267670295475872