Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq10510 354 1e-92 seq1274 165 1e-35 seq11814 131 2e-25 seq2449 131 2e-25 seq2044 131 2e-25 >seq10510 Length=112052 Score = 354 bits (392), Expect = 1e-92 Identities = 687/1006 (68%), Gaps = 10/1006 (1%) Strand=Plus/Minus Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 ||||| || | ||||| ||||| || |||| || || || || || || || ||||| Sbjct 23002 GATGCCGTGATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGAT 22943 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 || | || || | || | || |||| ||||||| || || || || || || || Sbjct 22942 GCAGGAGCAATCTCAGGATTGAATGTTCTTCGAATTATTAACGAGCCCACTGCTGCCGCT 22883 Query 195827 ATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || || ||||| |||||||| || ||| ||| || | ||||| ||||| Sbjct 22882 ATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCTT 22823 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 || ||||| || || ||||| || |||| | || || | || || |||||||| || Sbjct 22822 GGAGGTGGAACCTTCGATGTGTCCATTCTAACCATCGAGGACGGAATCTTCGAAGTGAAA 22763 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006 | || || ||||| || ||||| || || |||||||||||| ||| | | ||| Sbjct 22762 TCCACCGCCGGTGACACCCATCTTGGAGGAGAAGATTTCGATAACCGTATGGTTAACCAT 22703 Query 196007 TTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTT 196066 || | |||||| || ||| | |||||||| | | || ||| | ||| | Sbjct 22702 TTCGTAGCCGAGTTCAAGCGCAAGCACAAGAAAGACCTCAATACTAACCCTCGTGCTTTG 22643 Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACA 196126 ||||| || | || || || ||||||||||| || |||||||| ||| || ||||| | Sbjct 22642 CGTCGTCTCCGCACCGCTTGCGAACGTGCCAAGCGTACTCTCTCATCTTCGTCTCAAGCT 22583 Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186 |||| ||||| || |||| || || || ||||||||||| | ||||| ||||| Sbjct 22582 TCTATTGAAATTGACTCACTGTTCGAGGGTATCGACTTCTATACTAACATTACTCGTGCC 22523 Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT- 196245 || || |||||| | | ||||||| || | ||||| ||||||||| |||| Sbjct 22522 CGCTTCGAAGAGCTGTGCGCTGATTTATTCCGCTCCACCATGGATCCTGTTGAA-AAGTC 22464 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 || | ||||| |||||||| ||| || | | || || || ||||||||||| || Sbjct 22463 TCTGAGAGACGCCAAGATGGACAAGAGCCAGATCCACGATATCGTTCTTGTGGGAGGTTC 22404 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAA 196365 |||||||| || || | || | | || ||| | ||| | || || | || Sbjct 22403 CACCCGTATCCCCAAAGTCCAGAAACTTCTGTCTGATCTGTTCTCTGGAAAGGAACTGAA 22344 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | || || || ||||| ||||| || |||||||| || || || || || || || Sbjct 22343 TAAATCCATTAATCCTGATGAGGCAGTGGCATATGGTGCTGCTGTCCAAGCGGCCATCCT 22284 Query 196426 CTCAGGTGTTGACAA-TAATAA--CGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 || || |||||| | || || || |||||||| || || |||||||| || | Sbjct 22283 TTC---TGGTGACAAGTCCGAAGCGGTGCAGGATCTTCTACTTCTCGATGTTGCTCCTCT 22227 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 || || ||| | |||||||| ||||| || ||||| | || | |||||||| || Sbjct 22226 GTCACTTGGTATCGAAACAGCTGGTGGCGTAATGACGGCTCTGATCAAGAGGAACACCAC 22167 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCA 196602 ||||| || |||| || || | || || |||||||||||||| ||||| | Sbjct 22166 CATTCCCACCAAGACCAGTCAGACATTCACCACCTACTCCGATAATCAACCTGGTGTCCT 22107 Query 196603 TATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTT 196661 ||| ||||| | || ||||| || | | || ||||||||||| | || || |||| | Sbjct 22106 TATCCAAGTCTTCGAGGGAGAGCG-TGCAATGACAAAGGATAACAACCTTCTCGGAAAGT 22048 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGAT 196707 |||| ||| | || ||||| | || || | || ||||||||||| Sbjct 22047 TCGAGTTGTCCGGAATTCCGCCGGCCCCTCGTGGAGTTCCACAGAT 22002 >seq1274 Length=282356 Score = 165 bits (182), Expect = 1e-35 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 195614 GAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAG 195673 |||| |||||||||||| || || || ||||| | ||||| |||| ||||||||||| Sbjct 176324 GAGATGAAACAATTTGCACCGGAGGAGATTTCTGCAATGGTTTTGACAAAGATGAAGGAA 176265 Query 195674 ACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTAC 195733 | ||| ||||| | | | || ||| || ||| ||||||| || || || ||||| || Sbjct 176264 ATTGCCGAATCGTACCTTGGCAAAGAAGTAAAAAATGCAGTCGTCACCGTTCCTGCATAT 176205 Query 195734 TTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT 195793 |||| ||| |||||||||| ||||| ||||| || | | | ||||| || | ||| | Sbjct 176204 TTCAACGATGCACAACGACAAGCGACTAAGGATGCCGGTACAATTGCTGGATTGAACGTT 176145 Query 195794 CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | | ||||| || |||||||| || ||||||||||||||||| | || ||||| Sbjct 176144 GTACGGATTATTAACGAACCAACTGCAGCTGCAATTGCTTATGGATTAGATAAGAA 176089 >seq11814 Length=373676 Score = 131 bits (144), Expect = 2e-25 Identities = 225/326 (69%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||| || | || || || | | | || || ||||| | || || || || Sbjct 237395 AAGATGAAAGAAATCGCAGAGTCCTACCTTGGAAAGGAAGTGAAGCACGCTGTAGTCACC 237454 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| ||| | || || || || || ||||| || | | ||||| Sbjct 237455 GTGCCTGCCTACTTCAACGATGCCCAGCGTCAAGCTACTAAGGATGCGGGAACCATTGCT 237514 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || ||||| | || |||| ||||||||||||||||| ||||| || || || ||||| Sbjct 237515 GGATTAAACGTTGTTCGAATCATCAATGAACCAACAGCAGCTGCCATCGCATACGGTCTT 237574 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 |||||| ||||| | || ||| | | | || ||||| || |||||||| ||| Sbjct 237575 GACAAG---AAGGAAGGTGAACGTAATATCCTCGTATTCGATCTTGGAGGTGGTACCTTT 237631 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 |||||||| | || | || || ||| | |||||||| ||| ||| || || Sbjct 237632 GATGTCTCCATGCTTACCATCGATAACGGTGTGTTCGAAGTGTTGGCCACTAACGGAGAC 237691 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || || ||||| || || Sbjct 237692 ACTCACCTTGGAGGAGAAGACTTTGA 237717 >seq2449 Length=712056 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || |||||||| || ||||| ||||| ||||| || || | || Sbjct 483428 ATGCAAATTTTTGTAAAGACCCTTACGGGGAAAACCATCACGCTCGAAGTCGAAGCATCT 483369 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| || | |||||||| || ||||| || ||||| ||||| || || ||| Sbjct 483368 GACACAATCGAGAATGTGAAAGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 483309 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | |||||||| |||| Sbjct 483308 CAACGATTGATTTTTGCAGGTA 483287 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct 483801 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAGACGATCACCCTCGAAGTTGAGGCGTCT 483742 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || |||||||| || ||||| || || || || ||||| Sbjct 483741 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCGCCGGATCAA 483682 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || | || || || |||| Sbjct 483681 CAGCGGTTGATCTTCGCAGGTA 483660 >seq2044 Length=4727 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| || || || || ||||| || |||||||||||||| | || Sbjct 42 ATGCAAATCTTCGTGAAGACTCTCACGGGGAAAACAATTACCCTCGAGGTTGAAGCCTCG 101 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| || | ||||| ||||||||||| ||||| || || ||||| |||||| Sbjct 102 GACACAATCGAGAATGTGAAAGCTAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 161 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || || || || |||| Sbjct 162 CAGCGTCTGATCTTCGCCGGTA 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657764839006080