Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20]
11,864 sequences; 244,075,060 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq10510 354 1e-92
seq1274 165 1e-35
seq11814 131 2e-25
seq2449 131 2e-25
seq2044 131 2e-25
>seq10510
Length=112052
Score = 354 bits (392), Expect = 1e-92
Identities = 687/1006 (68%), Gaps = 10/1006 (1%)
Strand=Plus/Minus
Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766
||||| || | ||||| ||||| || |||| || || || || || || || |||||
Sbjct 23002 GATGCCGTGATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGAT 22943
Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826
|| | || || | || | || |||| ||||||| || || || || || || ||
Sbjct 22942 GCAGGAGCAATCTCAGGATTGAATGTTCTTCGAATTATTAACGAGCCCACTGCTGCCGCT 22883
Query 195827 ATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886
|| || || ||||| |||||||| || ||| ||| || | ||||| |||||
Sbjct 22882 ATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCTT 22823
Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946
|| ||||| || || ||||| || |||| | || || | || || |||||||| ||
Sbjct 22822 GGAGGTGGAACCTTCGATGTGTCCATTCTAACCATCGAGGACGGAATCTTCGAAGTGAAA 22763
Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006
| || || ||||| || ||||| || || |||||||||||| ||| | | |||
Sbjct 22762 TCCACCGCCGGTGACACCCATCTTGGAGGAGAAGATTTCGATAACCGTATGGTTAACCAT 22703
Query 196007 TTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTT 196066
|| | |||||| || ||| | |||||||| | | || ||| | ||| |
Sbjct 22702 TTCGTAGCCGAGTTCAAGCGCAAGCACAAGAAAGACCTCAATACTAACCCTCGTGCTTTG 22643
Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACA 196126
||||| || | || || || ||||||||||| || |||||||| ||| || ||||| |
Sbjct 22642 CGTCGTCTCCGCACCGCTTGCGAACGTGCCAAGCGTACTCTCTCATCTTCGTCTCAAGCT 22583
Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186
|||| ||||| || |||| || || || ||||||||||| | ||||| |||||
Sbjct 22582 TCTATTGAAATTGACTCACTGTTCGAGGGTATCGACTTCTATACTAACATTACTCGTGCC 22523
Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT- 196245
|| || |||||| | | ||||||| || | ||||| ||||||||| ||||
Sbjct 22522 CGCTTCGAAGAGCTGTGCGCTGATTTATTCCGCTCCACCATGGATCCTGTTGAA-AAGTC 22464
Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305
|| | ||||| |||||||| ||| || | | || || || ||||||||||| ||
Sbjct 22463 TCTGAGAGACGCCAAGATGGACAAGAGCCAGATCCACGATATCGTTCTTGTGGGAGGTTC 22404
Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAA 196365
|||||||| || || | || | | || ||| | ||| | || || | ||
Sbjct 22403 CACCCGTATCCCCAAAGTCCAGAAACTTCTGTCTGATCTGTTCTCTGGAAAGGAACTGAA 22344
Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425
||| | || || || ||||| ||||| || |||||||| || || || || || || ||
Sbjct 22343 TAAATCCATTAATCCTGATGAGGCAGTGGCATATGGTGCTGCTGTCCAAGCGGCCATCCT 22284
Query 196426 CTCAGGTGTTGACAA-TAATAA--CGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482
|| || |||||| | || || || |||||||| || || |||||||| || |
Sbjct 22283 TTC---TGGTGACAAGTCCGAAGCGGTGCAGGATCTTCTACTTCTCGATGTTGCTCCTCT 22227
Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542
|| || ||| | |||||||| ||||| || ||||| | || | |||||||| ||
Sbjct 22226 GTCACTTGGTATCGAAACAGCTGGTGGCGTAATGACGGCTCTGATCAAGAGGAACACCAC 22167
Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCA 196602
||||| || |||| || || | || || |||||||||||||| ||||| |
Sbjct 22166 CATTCCCACCAAGACCAGTCAGACATTCACCACCTACTCCGATAATCAACCTGGTGTCCT 22107
Query 196603 TATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTT 196661
||| ||||| | || ||||| || | | || ||||||||||| | || || |||| |
Sbjct 22106 TATCCAAGTCTTCGAGGGAGAGCG-TGCAATGACAAAGGATAACAACCTTCTCGGAAAGT 22048
Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGAT 196707
|||| ||| | || ||||| | || || | || |||||||||||
Sbjct 22047 TCGAGTTGTCCGGAATTCCGCCGGCCCCTCGTGGAGTTCCACAGAT 22002
>seq1274
Length=282356
Score = 165 bits (182), Expect = 1e-35
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 195614 GAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAG 195673
|||| |||||||||||| || || || ||||| | ||||| |||| |||||||||||
Sbjct 176324 GAGATGAAACAATTTGCACCGGAGGAGATTTCTGCAATGGTTTTGACAAAGATGAAGGAA 176265
Query 195674 ACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTAC 195733
| ||| ||||| | | | || ||| || ||| ||||||| || || || ||||| ||
Sbjct 176264 ATTGCCGAATCGTACCTTGGCAAAGAAGTAAAAAATGCAGTCGTCACCGTTCCTGCATAT 176205
Query 195734 TTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT 195793
|||| ||| |||||||||| ||||| ||||| || | | | ||||| || | ||| |
Sbjct 176204 TTCAACGATGCACAACGACAAGCGACTAAGGATGCCGGTACAATTGCTGGATTGAACGTT 176145
Query 195794 CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849
| | ||||| || |||||||| || ||||||||||||||||| | || |||||
Sbjct 176144 GTACGGATTATTAACGAACCAACTGCAGCTGCAATTGCTTATGGATTAGATAAGAA 176089
>seq11814
Length=373676
Score = 131 bits (144), Expect = 2e-25
Identities = 225/326 (69%), Gaps = 3/326 (1%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
|||||||| || | || || || | | | || || ||||| | || || || ||
Sbjct 237395 AAGATGAAAGAAATCGCAGAGTCCTACCTTGGAAAGGAAGTGAAGCACGCTGTAGTCACC 237454
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| ||||| ||||||| ||| | || || || || || ||||| || | | |||||
Sbjct 237455 GTGCCTGCCTACTTCAACGATGCCCAGCGTCAAGCTACTAAGGATGCGGGAACCATTGCT 237514
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
|| ||||| | || |||| ||||||||||||||||| ||||| || || || |||||
Sbjct 237515 GGATTAAACGTTGTTCGAATCATCAATGAACCAACAGCAGCTGCCATCGCATACGGTCTT 237574
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
|||||| ||||| | || ||| | | | || ||||| || |||||||| |||
Sbjct 237575 GACAAG---AAGGAAGGTGAACGTAATATCCTCGTATTCGATCTTGGAGGTGGTACCTTT 237631
Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961
|||||||| | || | || || ||| | |||||||| ||| ||| || ||
Sbjct 237632 GATGTCTCCATGCTTACCATCGATAACGGTGTGTTCGAAGTGTTGGCCACTAACGGAGAC 237691
Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| || || || ||||| || ||
Sbjct 237692 ACTCACCTTGGAGGAGAAGACTTTGA 237717
>seq2449
Length=712056
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || |||||||| || ||||| ||||| ||||| || || | ||
Sbjct 483428 ATGCAAATTTTTGTAAAGACCCTTACGGGGAAAACCATCACGCTCGAAGTCGAAGCATCT 483369
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||||||||| || | |||||||| || ||||| || ||||| ||||| || || |||
Sbjct 483368 GACACAATCGAGAATGTGAAAGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 483309
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|||||| | |||||||| ||||
Sbjct 483308 CAACGATTGATTTTTGCAGGTA 483287
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| ||||| ||||||||||| || ||||||||||| |||||| ||||
Sbjct 483801 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAGACGATCACCCTCGAAGTTGAGGCGTCT 483742
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || || | || || |||||||| || ||||| || || || || |||||
Sbjct 483741 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCGCCGGATCAA 483682
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || | || || || ||||
Sbjct 483681 CAGCGGTTGATCTTCGCAGGTA 483660
>seq2044
Length=4727
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| ||||| || || || || ||||| || |||||||||||||| | ||
Sbjct 42 ATGCAAATCTTCGTGAAGACTCTCACGGGGAAAACAATTACCCTCGAGGTTGAAGCCTCG 101
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||||||||| || | ||||| ||||||||||| ||||| || || ||||| ||||||
Sbjct 102 GACACAATCGAGAATGTGAAAGCTAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 161
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || || || || ||||
Sbjct 162 CAGCGTCTGATCTTCGCCGGTA 183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657764839006080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |