Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-22 seq11518 118 1e-20 >seq1 Length=1890151 Score = 123 bits (136), Expect = 3e-22 Identities = 160/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| ||| ||||| || || |||||||| ||||| | | || Sbjct 1568391 GCTTGGCGAGCTCTCCGGGCAGGATGAGGCGAACAGCAGTCTGGATTTCGCGGGAGGAGA 1568450 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGA--CGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | ||| |||||||| |||| || || || | ||||| ||||||| |||| Sbjct 1568451 TTGTGGATCGCTTGTTGTAGTGAGCGAGTTTCGAC--GCCTCAACAGCGATGCGCTCGAA 1568508 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 | |||||| || ||||||||||||| |||||||| ||| |||| || |||||| Sbjct 1568509 GACGTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGACGAGACTCCTGTGTCGGG 1568568 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||| |||||||| ||||| ||||||| || |||||| Sbjct 1568569 GTGGACCTGCTTCAGCACACGGTAGATGTACACCGAGTA 1568607 Score = 114 bits (126), Expect = 2e-19 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 1590144 GCTTGGCGAGCTCTCCGGGGAGGATGAGGCGAACAGCAGTCTGGATTTCGCGGGATGAGA 1590203 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGA--CGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | ||| |||||||| |||| || || || | ||||| ||||||| |||| Sbjct 1590204 TTGTGGATCGCTTGTTGTAGTGAGCGAGTTTCGAC--GCCTCAACAGCGATGCGCTCGAA 1590261 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 | |||||| || ||||||||||||| |||||||| ||| |||| || |||||| Sbjct 1590262 GACGTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGACGAGACTCCGGTGTCGGG 1590321 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||| |||||||| ||||| ||||||| || |||||| Sbjct 1590322 GTGGACCTGCTTCAGCACACGGTAGATGTACACCGAGTA 1590360 Score = 111 bits (122), Expect = 2e-18 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || ||||| || ||||| | | || Sbjct 1586052 GCTTGGCGAGCTCTCCGGGGAGGATGAGGCGAACAGCAGTCTGTATTTCGCGGGAGGAGA 1585993 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGA--CGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | ||| |||||||| |||| || || || | ||||| ||||||| |||| Sbjct 1585992 TTGTGGATCGCTTGTTGTAGTGAGCGAGTTTCGAC--GCCTCAACAGCGATGCGCTCGAA 1585935 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 | |||||| || ||||||||||||| |||||| | ||| |||| || |||||| Sbjct 1585934 GACGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTCGACGAGACTCCTGTGTCGGG 1585875 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||| |||||||| ||||| ||||||| || |||||| Sbjct 1585874 GTGGACCTGCTTCAGCACACGGTAGATGTACACCGAGTA 1585836 >seq11518 Length=100358 Score = 118 bits (130), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| ||||| ||| | |||||| ||||||| | || || || || Sbjct 79598 AGAAGCGCACTGACGATATCCCAAGTTGGGACGTGGAGTTTCTGAAGGTTGATCAAGGCA 79657 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || |||||||| || || || |||||||||||||||||| | || ||| | Sbjct 79658 CCCTTTTCGAGTTGATTCTTGCTGCGAACTACCTCGACATCAAGGGCTTACTTGATGTCA 79717 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| |||||||| ||||| | || |||||||| || || | Sbjct 79718 CATGCAAGACAGTGGCCAATATGATCAAAGGCAAAACTCCAGAGGAGATTCGACGCACAT 79777 Query 1592286 TTAACATCAAGTACG 1592300 ||||||| ||| ||| Sbjct 79778 TTAACATTAAGAACG 79792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106165584600888