Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 152 8e-31 seq11518 107 3e-17 seq5082 89.7 8e-12 seq2704 89.7 8e-12 >seq1 Length=1890151 Score = 152 bits (168), Expect = 8e-31 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||| || || || || || ||||||||| |||| || || ||| ||| Sbjct 1568352 TGTACTTCGTGACGGCTTTCGTTCCTTCAGACACGGCGTGCTTGGCGAGCTCTCCGGGCA 1568411 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || || |||||||| ||||||| | ||| ||| |||||||| ||| Sbjct 1568412 GGATGAGGCGAACAGCAGTCTGGATTTCGCGGGAGGAGATTGTGGATCGCTTGTTGTAGT 1568471 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || | ||||| ||||||| |||| | |||||| || |||||||| Sbjct 1568472 GAGCGAGTTTCGAC--GCCTCAACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 1568529 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| || |||| || ||||||||| |||||||| ||||| Sbjct 1568530 CATGATCGACATCGCCTTCGACGAGACTCCTGTGTCGGGGTGGACCTGCTTCAGCAC 1568586 Score = 138 bits (152), Expect = 2e-26 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| || || || || || || ||||||||| |||| || || ||| | | Sbjct 1590105 TGTACTTCGTGACAGCTTTCGTTCCTTCAGACACGGCGTGCTTGGCGAGCTCTCCGGGGA 1590164 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || || |||||||| ||||||| ||| ||| |||||||| ||| Sbjct 1590165 GGATGAGGCGAACAGCAGTCTGGATTTCGCGGGATGAGATTGTGGATCGCTTGTTGTAGT 1590224 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || | ||||| ||||||| |||| | |||||| || |||||||| Sbjct 1590225 GAGCGAGTTTCGAC--GCCTCAACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 1590282 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| || |||| || ||||||||| |||||||| ||||| Sbjct 1590283 CATGATCGACATCGCCTTCGACGAGACTCCGGTGTCGGGGTGGACCTGCTTCAGCAC 1590339 Score = 134 bits (148), Expect = 2e-25 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||| || || || || || ||||| ||| |||| || || ||| | | Sbjct 1586091 TGTACTTCGTGACGGCTTTCGTTCCTTCAGACACGGCATGCTTGGCGAGCTCTCCGGGGA 1586032 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || || ||||| || ||||||| | ||| ||| |||||||| ||| Sbjct 1586031 GGATGAGGCGAACAGCAGTCTGTATTTCGCGGGAGGAGATTGTGGATCGCTTGTTGTAGT 1585972 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || | ||||| ||||||| |||| | |||||| || |||||||| Sbjct 1585971 GAGCGAGTTTCGAC--GCCTCAACAGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 1585914 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | || |||| || ||||||||| |||||||| ||||| Sbjct 1585913 CATGATCGACATGGCCTTCGACGAGACTCCTGTGTCGGGGTGGACCTGCTTCAGCAC 1585857 >seq11518 Length=100358 Score = 107 bits (118), Expect = 3e-17 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 2035565 CGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACC 2035624 ||| |||||||| ||||| || | |||||| || ||| |||| || ||| Sbjct 79596 CGAGAAGCGCACTGACGATATCCCAAGTTGGGACGTGGAGTTTCTGAAGGTTGATCAAGG 79655 Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684 |||||| || |||||||| || || || |||||||||||||||||| | | || ||| | Sbjct 79656 CACCCTTTTCGAGTTGATTCTTGCTGCGAACTACCTCGACATCAAGGGCTTACTTGATGT 79715 Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGAC 2035744 |||||||| |||||||| | ||||| ||||| | || ||||| || || || Sbjct 79716 CACATGCAAGACAGTGGCCAATATGATCAAAGGCAAAACTCCAGAGGAGATTCGACGCAC 79775 Query 2035745 CTTTAACATCAAGTACG 2035761 |||||||| ||| ||| Sbjct 79776 ATTTAACATTAAGAACG 79792 >seq5082 Length=1371 Score = 89.7 bits (98), Expect = 8e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || || || ||| | || || || ||| | | Sbjct 1038 TGTACTTGGTGACAGCCTTTGTCCCCTCGGACACAGCATGCTTAGCGAGCTCTCCGGGAA 1097 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||||||||| || || ||||| || || | |||||| |||||||| Sbjct 1098 GAATCAGGCGCACAGCAGTTTGGATTTCACGAGAAGAGATCGTCGAACGCTTGTTGTAAT 1157 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | | || || |||| | |||||| || || || |||| Sbjct 1158 GGGCAAGCCGTGACGCTTCAGCAGCAATACGCTCGAAAACGTCGTTCACGAAGGAATTCA 1217 Query 1485650 TGATCGACATCG 1485661 |||||||||||| Sbjct 1218 TGATCGACATCG 1229 >seq2704 Length=193676 Score = 89.7 bits (98), Expect = 8e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || || || ||| | || || || ||| | | Sbjct 109009 TGTACTTGGTGACAGCCTTTGTCCCCTCGGACACAGCATGCTTAGCGAGCTCTCCGGGAA 109068 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||||||||| || || ||||| || || | |||||| |||||||| Sbjct 109069 GAATCAGGCGCACAGCAGTTTGGATTTCACGAGAAGAGATCGTCGAACGCTTGTTGTAAT 109128 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | | || || |||| | |||||| || || || |||| Sbjct 109129 GGGCAAGCCGTGACGCTTCAGCAGCAATACGCTCGAAAACGTCGTTCACGAAGGAATTCA 109188 Query 1485650 TGATCGACATCG 1485661 |||||||||||| Sbjct 109189 TGATCGACATCG 109200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914984372208296