Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq10510 242 3e-58 seq1274 147 2e-29 seq11814 98.7 7e-15 >seq10510 Length=112052 Score = 242 bits (268), Expect = 3e-58 Identities = 636/958 (66%), Gaps = 12/958 (1%) Strand=Plus/Plus Query 281523 TTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAA 281582 |||| ||| || ||||| || || | | || || |||||||| | ||||||| | Sbjct 22051 TTCCGAGAAGGTTGTTATCCTTTGTCATTGCACGCTCTCCCTCGAAGACTTGGATAAGGA 22110 Query 281583 CTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTT 281641 | ||| ||||||||| || || || || ||| |||| | | || ||||| || Sbjct 22111 CACCAGGTTGATTATCGGAGTAGGTGGTGAATG-TCTGACTGGTCTTGGTGGGAATGGTG 22169 Query 281642 GTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGA 281701 ||||| || | || | | ||||| | |||||||||||||| | |||||| || ||| Sbjct 22170 GTGTTCCTCTTGATCAGAGCCGTCATTACGCCACCAGCTGTTTCGATACCAAGTGACAGA 22229 Query 281702 GGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATA 281761 |||| ||||| | || | || || || | ||| | | |||| ||| || Sbjct 22230 GGAGCAACATCGAGAAGTAGAAGATCCTGCACCGCTTCGGACTTGTCACCAGAAAGGATG 22289 Query 281762 GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGT 281821 || ||||| | ||||||||||||||| || || ||||||||||||| | || ||| ||| Sbjct 22290 GCCGCTTGGACAGCAGCACCATATGCCACTGCCTCATCAGGATTAATGGATTTATTCAGT 22349 Query 281822 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCC 281880 | || ||| ||| | || || ||||||| ||| || || || ||||| | || || Sbjct 22350 TCCTTTCCAGAGAACAGATCAGACAGAAGTT-TCTGGACTTTGGGGATACGGGTGGAACC 22408 Query 281881 TCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTT 281940 ||| || | || || || || | ||| || |||| || | || | | || Sbjct 22409 TCCCACAAGAACGATATCGTGGATCTGGCTCTTGTCCATCTTGGCGTCTCTCAGAGACTT 22468 Query 281941 TTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCT 282000 |||||| || || | | | || || || | || || |||||||| || | Sbjct 22469 TTCAACAGGATCCATGGTGGAGCGGAATAAATCAGCGCACAGCTCTTCGAAGCGGGCACG 22528 Query 282001 AGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTT 282059 ||||| || | || || || || || ||||||| || |||| |||||| | || || Sbjct 22529 AGTAA-TGTTAGTATAGAAGTCGATACCCTCGAACAGTGAGTCAATTTCAATAGAAGCTT 22587 Query 282060 GAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 282119 ||| |||||| || || | ||| || |||||||| || || || | || | || || | Sbjct 22588 GAGACGAAGATGAGAGAGTACGCTTGGCACGTTCGCAAGCGGTGCGGAGACGACGCAAAG 22647 Query 282120 C-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 282178 | | | | | ||| | ||| | || | || | |||||| || | || | || Sbjct 22648 CACGAGGGTTAGT-ATTGAGGTCTTTCTTGTGCTTGCGCTTGAACTCGGCTACGAA--AT 22704 Query 282179 G--TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 282236 | | || | ||| ||||| |||||||| ||||| | | || | || | || | | Sbjct 22705 GGTTAACCATACGGTTATCGAAATCTTCTCCTCCAAGATGGGTGTCACCGGCGGTGGATT 22764 Query 282237 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296 | |||| ||| | ||| || || | | | || | ||||| ||||||||| || | Sbjct 22765 TCACTTCGAAGATTCCGTCCTCGATGGTTAGAATGGACACATCGAAGGTTCCACCTCCAA 22824 Query 282297 TATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAG 282356 ||| || || || || || ||| | || || || ||||| || || | || Sbjct 22825 GATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTCTTGTCGAGACCGTAGGCGATAG 22884 Query 282357 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 282416 | |||||||| || || |||||||||| | |||||| | || | ||| |||||||| Sbjct 22885 CGGCAGCAGTGGGCTCGTTAATAATTCGAAGAACATTCAATCCTGAGATTGCTCCTGCAT 22944 Query 282417 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | || |||||||| | || || ||||| ||||| ||||||||||| || |||||||| Sbjct 22945 CCTTGGTGGCTTGACGCTGCGAGTCGTTGAAATAGGCAGGAACAGTGATCACGGCATC 23002 >seq1274 Length=282356 Score = 147 bits (162), Expect = 2e-29 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| |||| ||||| ||||||||||| |||||||| | | ||| Sbjct 176089 TTCTTATCTAATCCATAAGCAATTGCAGCTGCAGTTGGTTCGTTAATAATCCGTACAACG 176148 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||||||||| | || ||||| ||||| ||||||| ||||| |||||| |||||| Sbjct 176149 TTCAATCCAGCAATTGTACCGGCATCCTTAGTCGCTTGTCGTTGTGCATCGTTGAAATAT 176208 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 |||||||| || | || |||| | |||||||||| |||| || || || || ||| Sbjct 176209 GCAGGAACGGTGACGACTGCATTTTTTACTTCTTTGCCAAGGTA--CGATTCGGCAATTT 176266 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTT 282561 ||||| || | |||| ||||| ||||| | || || | | |||| || Sbjct 176267 CCTTCATCTTTGTCAAAACCATTGCAGAAATCTCCTCCGGTGCAAATTGTTT 176318 >seq11814 Length=373676 Score = 98.7 bits (108), Expect = 7e-15 Identities = 169/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| || | ||| || | || | ||| ||| ||| || Sbjct 237636 ACATCAAAGGTACCACCTCCAAGATCGAATACGAGGATATTACGTTCAC---CTTCCTTC 237580 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||||||| || || | ||||| || ||||||||||| || |||| | ||| || Sbjct 237579 TTGTCAAGACCGTATGCGATGGCAGCTGCTGTTGGTTCATTGATGATTCGAACAACGTTT 237520 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | |||||||| |||| ||||| ||||| ||||| | || | |||||| || || ||| Sbjct 237519 AATCCAGCAATGGTTCCCGCATCCTTAGTAGCTTGACGCTGGGCATCGTTGAAGTAGGCA 237460 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 || || || | || || | | ||||| ||||||| || | ||| ||| |||| Sbjct 237459 GGCACGGTGACTACAGCGTGCTTCACTTCCTTTCCAAGGTAGGACTCTGCGATTTCTTTC 237400 Query 282515 ATTTT 282519 || || Sbjct 237399 ATCTT 237395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740047927737264