Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq68 152 1e-32 >seq68 Length=65501 Score = 152 bits (168), Expect = 1e-32 Identities = 239/337 (71%), Gaps = 15/337 (4%) Strand=Plus/Plus Query 18358 TCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGCC-TC- 18415 || || | ||| || || |||||||| || | |||||||| || || || || Sbjct 64318 TCGAGAAGGTGACGGAACCGCAGAATCGTGCTCTCGTCCGGCAAACGCGCCATACCGTCG 64377 Query 18416 -CCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACG 18474 |||||||||| || | || |||| ||| ||||| || || ||||||||||||||| Sbjct 64378 TCCAGCCCCGCAAACTCACGGTACAGCGGTACGTCATAAAGTGCCTCTTCCATCGCCGGA 64437 Query 18475 TCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAAC 18534 |||| ||||| ||||| ||||||| || || || |||||||||| | || |||||| Sbjct 64438 TCCGAAAGCCCAAACCACTGCTGCATGAAATGAATCTGCAGCATCGTCGCAACCGGAAAC 64497 Query 18535 GGCTTCCGACCCGTCGCCTTGACCGGCGCA---TGCGGCGCTATCAACGCCAAAAACGCC 18591 ||| || || || ||| ||| || | ||||| | |||||||| | ||| | Sbjct 64498 GGCGGCCTTCCAGT---CTTACCCGTCGGATAGTGCGGTTCGATCAACGCAATCAACCTC 64554 Query 18592 TGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGTGCGTCGGTTG 18651 ||| ||||| || || ||||||||| |||||| || |||||||||||||| || Sbjct 64555 GACCATGGCACGACGCGCCTCATCTCATCGAGAAATTCCCGCTTGCGCGTGCGT---TTC 64611 Query 18652 CTC---AGGTCCAGGCCAAGGTCGCTTTGTTTCATGG 18685 || || ||||||||||| || ||| |||||| Sbjct 64612 GTCGAAAGATCCAGGCCAAGACCGAGCTGTGTCATGG 64648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127866782949952