Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-20 >seq1 Length=1890151 Score = 116 bits (128), Expect = 5e-20 Identities = 168/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| || | | | | || || || | | Sbjct 1568595 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACAG--GAGTC-TCGTCGAA---GGCG 1568542 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| ||||| || Sbjct 1568541 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGC--GT 1568484 Query 725031 CG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | || ||||||||| ||| ||| | | ||||| |||||||| || | Sbjct 1568483 CGAAACTCGCTCACTACAACAAGCGATCCACAATCTCCTCCCGCGAAATCCAGACTGCTG 1568424 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| ||| ||| ||| || || |||| ||||||||| || || || || Sbjct 1568423 TTCGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTGTCTGAAGGAAC 1568372 Score = 113 bits (124), Expect = 6e-19 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| |||| | | | || || || | | Sbjct 1590348 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACCG--GAGTC-TCGTCGAA---GGCG 1590295 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| ||||| || Sbjct 1590294 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGC--GT 1590237 Query 725031 CG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | || ||||||||| ||| ||| | ||||| |||||||| || | Sbjct 1590236 CGAAACTCGCTCACTACAACAAGCGATCCACAATCTCATCCCGCGAAATCCAGACTGCTG 1590177 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| ||| | | ||| || || |||| ||||||||| || || || || Sbjct 1590176 TTCGCCTCATCCTCCCCGGAGAGCTCGCCAAGCACGCCGTGTCTGAAGGAAC 1590125 Score = 107 bits (118), Expect = 3e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| |||||||| |||||| || | | | | || || || | || Sbjct 1585848 ATCTACCGTGTGCTGAAGCAGGTCCACCCCGACACAG--GAGTC-TCGTCGAA---GGCC 1585901 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| ||||| || Sbjct 1585902 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGC--GT 1585959 Query 725031 CG--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | || ||||||||| ||| ||| | | ||||| || ||||| || | Sbjct 1585960 CGAAACTCGCTCACTACAACAAGCGATCCACAATCTCCTCCCGCGAAATACAGACTGCTG 1586019 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| ||| | | ||| || || |||| ||| ||||| || || || || Sbjct 1586020 TTCGCCTCATCCTCCCCGGAGAGCTCGCCAAGCATGCCGTGTCTGAAGGAAC 1586071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176666895393968