Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10510 295 2e-74 seq2449 196 1e-44 seq1274 122 3e-22 seq11814 116 1e-20 >seq10510 Length=112052 Score = 295 bits (326), Expect = 2e-74 Identities = 567/826 (69%), Gaps = 10/826 (1%) Strand=Plus/Minus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 ||||| || || ||||| || |||||||| || || | |||||| || || || ||| Sbjct 23002 GATGCCGTGATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGAT 22943 Query 349667 GCTGGCAGCATTG-CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGC 349725 || || |||| | | || || |||||||| |||| ||||| || ||||||||||| || Sbjct 22942 GCAGG-AGCAATCTCAGGATTGAATGTTCTTCGAATTATTAACGAGCCCACTGCTGCCGC 22884 Query 349726 AATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTT 349785 || || || || || || || | | || | ||| ||| | || || || ||| | Sbjct 22883 TATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCT 22824 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || ||||| || || ||||| || | ||||| | || || ||||| || ||||| || Sbjct 22823 TGGAGGTGGAACCTTCGATGTGTCCATTCTAACCATCGAGGACGGAATCTTCGAAGTGAA 22764 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905 | | || || ||||| || |||||||| ||||||||||| ||||| ||| | ||| || Sbjct 22763 ATCCACCGCCGGTGACACCCATCTTGGAGGAGAAGATTTCGATAACCGTATGGTTAACCA 22704 Query 349906 TTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAA 349964 ||| || || || ||||| ||||| || | || | ||| ||| | || Sbjct 22703 TTTCGTAGCCGAGTTCAAGCG-CAAGCACAAGAAAGACCTCAATACTAACCCTCGTGCTT 22645 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | || || || |||||||| |||||| | | |||||| | | ||| Sbjct 22644 TGCGTCGTCTCCGCACCGCTTGCGAACGTGCCAAGCGTACTCTCTCATCTTCGTCTCAAG 22585 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | |||||||||||||| || || || || | || |||| | | ||||| |||| Sbjct 22584 CTTCTATTGAAATTGACTCACTGTTCGAGGGTATCGACTTCTATACTAACATTACTCGTG 22525 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | || ||| | || | | || ||||||||||| | ||||| Sbjct 22524 CCCGCTTCGAAGAGCTGTGCGCTGATTTATTCCGCTCCACCATGGATCCTGTTG-AAAAG 22466 Query 350145 TAT-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 | | | | ||| || || ||| ||| | ||||| | || | ||| | || || ||| Sbjct 22465 TCTCTGAGAGACGCCAAGATGGACAAGAGCCAGATCCACGATATCGTTCTTGTGGGAGGT 22406 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT 350263 || || ||||| || ||||| || | | || ||||| | || ||| || |||| Sbjct 22405 TCCACCCGTATCCCCAAAGTCCAGAAACTTCTGTCTGATCTGTTCTCTGGAAAGGAACTG 22346 Query 350264 TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATT 350323 || ||| |||||||| ||||| || || ||||||||||||||||| || || | || Sbjct 22345 AATAAATCCATTAATCCTGATGAGGCAGTGGCATATGGTGCTGCTGTCCAAGCGGCCATC 22286 Query 350324 TTATCTGGAAATAAGAGTTCTAA--AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | ||||| | | ||| | || | | ||||| |||| || ||||| |||| | Sbjct 22285 CTTTCTGGTGACA--AGTCCGAAGCGGTGCAGGATCTTCTACTTCTCGATGTTGCTCCTC 22228 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 | || ||||| | ||||| |||||| |||||||| | ||| || Sbjct 22227 TGTCACTTGGTATCGAAACAGCTGGTGGCGTAATGACGGCTCTGAT 22182 Score = 113 bits (124), Expect = 1e-19 Identities = 354/546 (65%), Gaps = 2/546 (0%) Strand=Plus/Plus Query 183246 ATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT 183305 || || ||||| ||||| ||||||||||| || || ||||| || ||||| || | Sbjct 22287 ATGGCCGCTTGGACAGCAGCACCATATGCCACTGCCTCATCAGGATTAATGGATTTATTC 22346 Query 183306 AATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAA 183365 | ||| || ||| || | || || || | || || | ||| || || | || ||| Sbjct 22347 AGTTCCTTTCCAGAGAACAGATCAGACAGAAGTTTCTGGACTTTGGGGATACGGGTGGAA 22406 Query 183366 CCACCGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACT 183425 || || || | || | || | ||| | || || || | | ||| | | | Sbjct 22407 CCTCCCACAAGAACGATATCGTGGATCTGGCTCTTGTCCATCTTGGCGTCTCTCAGAGAC 22466 Query 183426 TTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCT 183485 ||||||||||| ||||| || | |||||||| || | |||||| || | || Sbjct 22467 TTTTCAACAGGATCCATGGTGGAGCGGAATAAATCAGCGCACAGCTCTTCGAAGCGGGCA 22526 Query 183486 CTAGTTAAAGAT-GaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGT 183544 | || ||| | | | | | ||||| ||||| | | | || ||||||||||| || | Sbjct 22527 CGAG-TAATGTTAGTATAGAAGTCGATACCCTCGAACAGTGAGTCAATTTCAATAGAAGC 22585 Query 183545 TTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAA 183604 ||| | || ||||| | || | || || ||||| || || || | || ||||| || Sbjct 22586 TTGAGACGAAGATGAGAGAGTACGCTTGGCACGTTCGCAAGCGGTGCGGAGACGACGCAA 22645 Query 183605 TGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATG 183664 | | || ||| | | |||| || || || | || || || | | ||||| Sbjct 22646 AGCACGAGGGTTAGTATTGAGGTCTTTCTTGTGCTTGCGCTTGAACTCGGCTACGAAATG 22705 Query 183665 TTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTT 183724 | || | | |||| |||||||| || || | ||| || || || || || | ||| Sbjct 22706 GTTAACCATACGGTTATCGAAATCTTCTCCTCCAAGATGGGTGTCACCGGCGGTGGATTT 22765 Query 183725 AACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAA 183784 ||||| || |||||||| || || ||| ||| || ||||| || || ||||| || | Sbjct 22766 CACTTCGAAGATTCCGTCCTCGATGGTTAGAATGGACACATCGAAGGTTCCACCTCCAAG 22825 Query 183785 ATCAAA 183790 ||| || Sbjct 22826 ATCGAA 22831 >seq2449 Length=712056 Score = 196 bits (216), Expect = 1e-44 Identities = 171/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||||||||| || || || || ||||| ||||| || || || || |||||| Sbjct 481487 AGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGACAACGTACGACCATCT 481546 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || |||||||||||||||| || || ||||| |||||||||||||| || ||| Sbjct 481547 TCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCTTCCTTGTCC 481606 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || ||||| ||||| | || |||| ||| ||||| || || | |||| Sbjct 481607 TGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCTACTTCCAGAGTGATTGTC 481666 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || || || || |||||||||||| Sbjct 481667 TTCCCGGTCAGAGTCTTCACGAAAATCTGCATT 481699 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | |||||||| || ||||||||||||||||| || || ||||| ||| Sbjct 483289 CCTGCAAAAATCAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCT 483348 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||||||| ||| ||||| || || | || || || || || Sbjct 483349 TTCACATTCTCGATTGTGTCAGATGCTTCGACTTCGAGCGTGATGGTTTTCCCCGTAAGG 483408 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || ||||||||||| ||||| Sbjct 483409 GTCTTTACAAAAATTTGCAT 483428 >seq1274 Length=282356 Score = 122 bits (134), Expect = 3e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 349520 AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCT 349579 ||||||||| ||| || || ||||| |||||||||| || |||||||||||||| Sbjct 176318 AAACAATTTGCACCGGAGGAGATTTCTGCAATGGTTTTGACAAAGATGAAGGAAATTGCC 176259 Query 349580 GAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAAT 349639 ||| | || | || || ||||| |||| || | || || || || ||||| || Sbjct 176258 GAATCGTACCTTGGCAAAGAAGTAAAAAATGCAGTCGTCACCGTTCCTGCATATTTCAAC 176199 Query 349640 GATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGA 349699 ||||| || || || || || ||||| || | ||||| || || || ||| || | Sbjct 176198 GATGCACAACGACAAGCGACTAAGGATGCCGGTACAATTGCTGGATTGAACGTTGTACGG 176139 Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || ||||| ||||| ||||| || |||||||| ||||| | ||||| Sbjct 176138 ATTATTAACGAACCAACTGCAGCTGCAATTGCTTATGGATTAGATAA 176092 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/182 (73%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 ||||||| ||||| || |||||||| || ||||| || || || || ||| || || Sbjct 175204 CAGCTTGTACAGCAGCTCCATATGCTACCGCTTCGTCGGGATTTATACCACGTGAAGGTT 175263 Query 183310 CTTTGCCATTAAAAAATTC--TGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACC 183367 | || |||||||| || || ||| | | ||| |||| ||||||||||||||| || || Sbjct 175264 CCTTACCATTAAAGAAATCCTTGATA--AGTTGCTGAACTTTTGGAATTCTAGTGGATCC 175321 Query 183368 ACCGACTAATACTACTTCATCGATAT--TACTTTTACTAATTTGTGAATCTTTTAAAACT 183425 |||||||| || | |||| | || | ||||| | || | ||||||| || ||| Sbjct 175322 TCCGACTAACACAATCTCATGAACATCCTCCTTTTTCAAA--TCAGAATCTTCTAGAACC 175379 Query 183426 TT 183427 || Sbjct 175380 TT 175381 >seq11814 Length=373676 Score = 116 bits (128), Expect = 1e-20 Identities = 193/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| | || || || ||||| || || |||||||||||| || || || ||||| Sbjct 237443 GCTGTAGTCACCGTGCCTGCCTACTTCAACGATGCCCAGCGTCAAGCTACTAAGGATGCG 237502 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| || ||||| ||| | |||| || |||||||| || || || || || Sbjct 237503 GGAACCATTGCTGGATTAAACGTTGTTCGAATCATCAATGAACCAACAGCAGCTGCCATC 237562 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 ||||| || ||||| || || || ||| ||||| || | || ||| | || Sbjct 237563 GCATACGGTCTTGACAA---GAAGGAAGGTGAACGTAATATCCTCGTATTCGATCTTGGA 237619 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| |||||||| || | || || | || | || | || ||||| || Sbjct 237620 GGTGGTACCTTTGATGTCTCCATGCTTACCATCGATAACGGTGTGTTCGAAGTGTTGGCC 237679 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||| || || || || ||||| |||||||| ||||| Sbjct 237680 ACTAACGGAGACACTCACCTTGGAGGAGAAGACTTTGA 237717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515024069966792